PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC038726.70 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 51aa MW: 5784.72 Da PI: 10.6014 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.4 | 5.1e-15 | 22 | 51 | 3 | 32 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCd 32 ie +s r+vtfskR +g++ KA ELS+LC+ EcC038726.70 22 IEKESAREVTFSKRHQGLFRKAAELSILCG 51 899**************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.161 | 12 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.1E-4 | 12 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.8E-14 | 13 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.43E-13 | 14 | 51 | No hit | No description |
PRINTS | PR00404 | 9.3E-11 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.6E-15 | 22 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-11 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-11 | 49 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055085 | Biological Process | transmembrane transport | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0022891 | Molecular Function | substrate-specific transmembrane transporter activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 51 aa Download sequence Send to blast |
SPTMEEAKRG PKPRRRVECG LIEKESAREV TFSKRHQGLF RKAAELSILC G |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010058861.1 | 2e-25 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
STRING | XP_010058861.1 | 7e-25 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65080.1 | 4e-10 | MIKC_MADS family protein |