PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC038575.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 263aa MW: 29767.2 Da PI: 4.2439 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.1 | 3.6e-16 | 12 | 58 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i + r vt+skRr+g++ KA+ L+ LC+a++av++fs+ gk y + EcC038575.40 12 IADPAARLVTYSKRRKGLFNKASQLCRLCGARAAVLVFSPAGKPYSF 58 66777899**********************************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.469 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-20 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-13 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-21 | 4 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-20 | 12 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-13 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-13 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006436 | Biological Process | tryptophanyl-tRNA aminoacylation | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004830 | Molecular Function | tryptophan-tRNA ligase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0005525 | Molecular Function | GTP binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MGKRRRTEIA EIADPAARLV TYSKRRKGLF NKASQLCRLC GARAAVLVFS PAGKPYSFGD 60 PSADEIIGDY LRHCDCDGDG DVTPPMDLTQ WADWMETEWE ACATEEDLES LILKYEAVRD 120 CARDKLKSLE EEASQVGVGG GESRILSAEE IDALXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXQLSA 240 VDSMPTTSLD LKICMSCCEY DEY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010046035.1 | 1e-101 | PREDICTED: MADS-box transcription factor 50-like | ||||
TrEMBL | A0A059D1D1 | 2e-88 | A0A059D1D1_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010045950.1 | 1e-101 | (Eucalyptus grandis) | ||||
STRING | XP_010046035.1 | 1e-101 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-20 | AGAMOUS-like 29 |