PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC038572.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 262aa MW: 29205.2 Da PI: 9.2107

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC038572.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.7	1.4e-33	21	95	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd++vl+ kg+lvg++ktLvfy+grapkg+ktdWvmhe+r+ EcC038572.10 21 VGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRAVLR-KGTLVGMRKTLVFYQGRAPKGRKTDWVMHEFRV 95 3679***********************************9.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.654	1	122	IPR003441	NAC domain
Pfam	PF02365	1.3E-15	12	95	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-39	19	122	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MATLITMPRE PPFPRSQTAC VGGKEWYFYS QRDRKYATGL RTNRATASGY WKATGKDRAV 60 LRKGTLVGMR KTLVFYQGRA PKGRKTDWVM HEFRVEGPHG PPNNTKISSL KEDWVLCRVF 120 FKSVEVATKP STGIVSCYDN RGTSSLPSLM DSFITFDQAH PQPNLISNIE QVPCFSIFSP 180 SQANPIHVEP SMPARTINAS AFGAMPDFSS CNNLDSYACD KKVLKAVLNQ LTEMDSPSLG 240 DQGSSESFLS EVAMPNNMWN HF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-33	5	122	52	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-33	5	122	52	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-33	5	122	52	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-33	5	122	52	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-33	5	123	55	169	NAC domain-containing protein 19
3swm_B	4e-33	5	123	55	169	NAC domain-containing protein 19
3swm_C	4e-33	5	123	55	169	NAC domain-containing protein 19
3swm_D	4e-33	5	123	55	169	NAC domain-containing protein 19
3swp_A	4e-33	5	123	55	169	NAC domain-containing protein 19
3swp_B	4e-33	5	123	55	169	NAC domain-containing protein 19
3swp_C	4e-33	5	123	55	169	NAC domain-containing protein 19
3swp_D	4e-33	5	123	55	169	NAC domain-containing protein 19
4dul_A	4e-33	5	122	52	165	NAC domain-containing protein 19
4dul_B	4e-33	5	122	52	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010060830.1	0.0	PREDICTED: NAC domain-containing protein 21/22
Swissprot	Q84TE6	4e-84	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A059BPP9	1e-180	A0A059BPP9_EUCGR; Uncharacterized protein
STRING	XP_010060830.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3619	28	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.1	2e-87	NAC domain containing protein 1

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]