PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC038512.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 26313.2 Da PI: 4.7661 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.4e-18 | 118 | 170 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr+++ +g+++AeIrdp++ng +r +lg++ t++eA a+++a+ +++g+ EcC038512.10 118 CLYRGVRRRP-WGKYAAEIRDPKKNG--ARRWLGTYETPQEAGLAYDRAAFAMRGA 170 56********.***********9998..*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.99E-30 | 118 | 179 | No hit | No description |
Pfam | PF00847 | 1.9E-12 | 118 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.9E-33 | 119 | 183 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.484 | 119 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-22 | 119 | 178 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-30 | 120 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-13 | 120 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-13 | 159 | 179 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MYSASSTVSE SDVALLERIR QHLLDDDDDF ETLAKIAENV QFHCPDSSFI TFPPLETTMS 60 FEANDDDADV HHDPLKDAVG FESPSSLNEQ PVVDYGHVEA NEAMPAVMRE CDTQPGECLY 120 RGVRRRPWGK YAAEIRDPKK NGARRWLGTY ETPQEAGLAY DRAAFAMRGA KARLNFPHLI 180 GCDEVEPVRV TRKRHRSPEA GSGALDSKCR KEDSIGSAGD PEKLNGYVMS FQWSGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-26 | 120 | 184 | 6 | 70 | ATERF1 |
3gcc_A | 1e-26 | 120 | 184 | 6 | 70 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018728766.1 | 1e-165 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A059C5A0 | 1e-106 | A0A059C5A0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010058506.1 | 1e-127 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-41 | ethylene-responsive element binding factor 13 |