PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC038443.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ARR-B | ||||||||
Protein Properties | Length: 277aa MW: 31363.3 Da PI: 8.0983 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76 | 4.8e-24 | 218 | 271 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k++++Wt+ LH+ F++a++ + G +kA+Pk+ile+m+v+gLt+e+++SHLQkYR+ EcC038443.20 218 KTKVVWTTGLHDLFLHAINYI-GLDKAVPKRILEFMNVPGLTRENIASHLQKYRI 271 6799*****************.********************************6 PP | |||||||
2 | Response_reg | 53.9 | 9.9e-19 | 50 | 136 | 23 | 109 |
CEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 23 yeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 + +v + +++ al +l++++ +Dl+++D mp+m+Glel ++ ree klp+i++++ + ++ +le l+ Ga +++Kp p++l + EcC038443.20 50 I-SVVTSKHPLHALSILQARKcsFDLVMTDYHMPDMNGLELQRHVREEF-KLPVIIMSGDDRQTIILESLEGGAAFYIVKPLRPDDLKN 136 5.7888899999*****999999************************99.************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 24.344 | 26 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
SMART | SM00448 | 5.2E-9 | 33 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.16E-18 | 36 | 142 | No hit | No description |
SuperFamily | SSF52172 | 2.42E-23 | 50 | 145 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.9E-25 | 50 | 149 | No hit | No description |
Pfam | PF00072 | 3.8E-15 | 51 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS51294 | 9.244 | 215 | 274 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.84E-19 | 216 | 275 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 217 | 275 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.7E-24 | 218 | 271 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004190 | Molecular Function | aspartic-type endopeptidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
IIYLPSTRAL VTYIHIEKGY FKGENKASTS GALIFLRIAL SNDGSAMLWI SVVTSKHPLH 60 ALSILQARKC SFDLVMTDYH MPDMNGLELQ RHVREEFKLP VIIMSGDDRQ TIILESLEGG 120 AAFYIVKPLR PDDLKNVWQY CIARKKGKAV LIEEEAASDS TSAPVCERII HEDVNIPVQP 180 LNLEKEGSSQ EPNGKKRSRE EKDENDEGID YSLIPPRKTK VVWTTGLHDL FLHAINYIGL 240 DKAVPKRILE FMNVPGLTRE NIASHLQKYR IFLKKVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-18 | 217 | 277 | 4 | 64 | ARR10-B |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018720289.1 | 1e-121 | PREDICTED: putative two-component response regulator ARR13 | ||||
TrEMBL | A0A251QN38 | 8e-79 | A0A251QN38_PRUPE; Uncharacterized protein (Fragment) | ||||
STRING | XP_010038427.1 | 1e-162 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 7e-54 | response regulator 2 |