PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC038426.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 113aa MW: 13193.2 Da PI: 10.71

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC038426.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.1	2.7e-12	1	111	1	99
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkl 84 f+k lt+sd + ++rl + ++f+++h + ++ ++ +++++d + + ++ + ++ +sg++vl++GW keFvk L +gD v ++ EcC038426.10 1 FKKRLTQSDLGHLSRLLIRRDFVKSHflrwmneetvrQVESGKGADVIVRDMDTcSEHRLVFVFWASSGSHVLKGGWiKEFVKRRWLAAGDEVGIYW 97 899************************98888777545558889999997766778888888*********999**************7 PP -SS.SEE..EEEEE-S CS B3 85 dgr.sefelvvkvfrk 99 d s+f +++v+rk EcC038426.10 98 DAIaSKF--HFSVLRK 111 7655666..8888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	0.0034	1	112	IPR003340	B3 DNA binding domain
CDD	cd10017	6.22E-15	1	110	No hit	No description
Pfam	PF02362	1.2E-8	1	110	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.6E-16	1	111	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.51E-15	1	111	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
FKKRLTQSDL GHLSRLLIRR DFVKSHFLRW MNEETVRQVE SGKGADVIVR DMDTCSEHRL 60 VFVFWASSGS HVLKGGWIKE FVKRRWLAAG DEVGIYWDAI ASKFHFSVLR KAN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018728844.1	5e-76	PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBL	A0A059C5T8	9e-75	A0A059C5T8_EUCGR; Uncharacterized protein
STRING	XP_010058723.1	2e-70	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM456	9	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	2e-23	B3 family protein