PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC037807.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 274aa    MW: 30863.9 Da    PI: 5.8105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC037807.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.4e-14145448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     W++eEd++l +++  +G g+W++++   g+ R +k+c++rw +yl
     EcC037807.10  1 WSPEEDQRLRNYILNHGHGCWSSVPINTGLQRNGKSCRLRWINYL 45
                     *******************************************97 PP
2Myb_DNA-binding58.12e-185196148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg +T+eE+e+++ ++++ G++ W+ Ia++++ gRt++++k++w++yl
     EcC037807.10 51 RGMFTPEEEEIILSLHRLIGNK-WSQIAKHLP-GRTDNEIKNHWHSYL 96
                     789*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001675.23E-9145No hitNo description
PROSITE profilePS5129416.29145IPR017930Myb domain
SMARTSM007172.3E-5147IPR001005SANT/Myb domain
SuperFamilySSF466894.4E-28192IPR009057Homeodomain-like
PfamPF002493.1E-12145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-21152IPR009057Homeodomain-like
PROSITE profilePS5129428.28246100IPR017930Myb domain
SMARTSM007175.9E-165098IPR001005SANT/Myb domain
PfamPF002496.5E-175196IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2753100IPR009057Homeodomain-like
CDDcd001674.14E-135496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
WSPEEDQRLR NYILNHGHGC WSSVPINTGL QRNGKSCRLR WINYLRPGLK RGMFTPEEEE  60
IILSLHRLIG NKWSQIAKHL PGRTDNEIKN HWHSYLKKKV ANKTESSSSS EARHDAQSQC  120
TNSDNVESLP SPDQIPTNQN ASVHAPSQEQ KEKMSLDFPN GGPRSCLPKI FFAEWLNQAD  180
QGYNVPTYGD AFDYRSNLQD SLVHDWCTSD FGNSYGGEYV GNELSKGSAS ASVSDMYSSR  240
LKSEMDQVSG GGFYLDYFSG DDMCSQFDMG SDVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24110010108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035126.10.0PREDICTED: transcription factor LAF1
SwissprotQ9M0K41e-53LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A058ZYA50.0A0A058ZYA5_EUCGR; Uncharacterized protein
STRINGXP_010035126.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.17e-56myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]