PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC037392.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NF-YC | ||||||||
Protein Properties | Length: 264aa MW: 29588.4 Da PI: 5.7378 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.9 | 2e-55 | 82 | 186 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvd EcC037392.20 82 QLQMFWADQmqeIEQTQDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVD 178 89*****9977889*********************************************************************************** PP NF-YC 95 ivprdelk 102 i+prdelk EcC037392.20 179 IIPRDELK 186 *****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.18E-34 | 61 | 176 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 9.4E-38 | 95 | 168 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-21 | 104 | 167 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0004601 | Molecular Function | peroxidase activity | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0020037 | Molecular Function | heme binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDQTEQTQQQ QQQQVVGVVA GTNQMAYAPP FPTAPVVAPG TPAVPIPSPT QAPSTFPGSP 60 HQLAYQQAQH FHHQQHQQQQ QQLQMFWADQ MQEIEQTQDF KNHSLPLARI KKIMKADEDV 120 RMISAEAPVV FAKACEMFIL ELTLRSWIHT EENKRRTLQK NDIAAAISRT DVFDFLVDII 180 PRDELKEEGL GVTKATIPVV GSPADIPYYY VPPQHPMGHP STIMGKPADQ AALYAAQQPQ 240 PPVSFMPWPH AQSQQTQDDQ QTNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-58 | 90 | 182 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 160 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010060857.1 | 1e-158 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_010060858.1 | 1e-158 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_010060859.1 | 1e-158 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8LCG7 | 1e-81 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A059BNQ5 | 1e-156 | A0A059BNQ5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010060857.1 | 1e-157 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-81 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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