PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC037392.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YC

Protein Properties

Length: 264aa MW: 29588.4 Da PI: 5.7378

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC037392.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.9	2e-55	82	186	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvd EcC037392.20 82 QLQMFWADQmqeIEQTQDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVD 178 89***9977889******************************************************************************* PP NF-YC 95 ivprdelk 102 i+prdelk EcC037392.20 179 IIPRDELK 186 ***975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.18E-34	61	176	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	9.4E-38	95	168	IPR009072	Histone-fold
Pfam	PF00808	1.7E-21	104	167	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0006979	Biological Process	response to oxidative stress
GO:0055114	Biological Process	oxidation-reduction process
GO:0004601	Molecular Function	peroxidase activity
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding
GO:0020037	Molecular Function	heme binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MDQTEQTQQQ QQQQVVGVVA GTNQMAYAPP FPTAPVVAPG TPAVPIPSPT QAPSTFPGSP 60 HQLAYQQAQH FHHQQHQQQQ QQLQMFWADQ MQEIEQTQDF KNHSLPLARI KKIMKADEDV 120 RMISAEAPVV FAKACEMFIL ELTLRSWIHT EENKRRTLQK NDIAAAISRT DVFDFLVDII 180 PRDELKEEGL GVTKATIPVV GSPADIPYYY VPPQHPMGHP STIMGKPADQ AALYAAQQPQ 240 PPVSFMPWPH AQSQQTQDDQ QTNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	5e-58	90	182	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	160	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010060857.1	1e-158	PREDICTED: nuclear transcription factor Y subunit C-2
Refseq	XP_010060858.1	1e-158	PREDICTED: nuclear transcription factor Y subunit C-2
Refseq	XP_010060859.1	1e-158	PREDICTED: nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	1e-81	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A059BNQ5	1e-156	A0A059BNQ5_EUCGR; Uncharacterized protein
STRING	XP_010060857.1	1e-157	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-81	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]