PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC037173.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 493aa    MW: 51819.4 Da    PI: 9.1502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC037173.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20247296255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                   +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  EcC037173.10 247 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 296
                   8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-33246305IPR001471AP2/ERF domain
PfamPF008473.0E-14247296IPR001471AP2/ERF domain
CDDcd000181.68E-21247306No hitNo description
SuperFamilySSF541711.77E-22247305IPR016177DNA-binding domain
PROSITE profilePS5103225.686247304IPR001471AP2/ERF domain
SMARTSM003801.7E-37247310IPR001471AP2/ERF domain
PRINTSPR003671.5E-11248259IPR001471AP2/ERF domain
PRINTSPR003671.5E-11270286IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MCILLKVASQ GKSGDHTSTH VSSGGDDDRG ESADYARETP LMPPTQQAAQ PLQQQQLLFD  60
QAAAAAATRR QAGAFVPQRL ALEPHDTEMM AMVSALRQVV SAGQHGGGGL GEALAPASVP  120
SSSASSSSPF PTYSPFASPG PSSFGDSGSG SGSGSWVGQK RRREEESSSS SGHQLLESIP  180
RSYRGYGDFG GGSSEKAEPS SPIGEEEAKP VVPPPPAATA ATVTAAVPLA PAEPAAAQGE  240
SGERRRKYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFDTA EAAARAYDEA ALRFRGNRAK  300
LNFPELARLV QPMPQGVTGL AAAIPRAAAA PLPPPRQPPP PPQGSYPPVQ GTDVFRDYWE  360
YSRLLQGQPS NLLEQMMYTS RLQQSEFPSP SSFSVSFSTP SSSLSSSSLS SSSSIPPPQP  420
QSPFFAPSGP SPSTPFPLLY SGRHQQLSYP RQPPLPPSNQ DQGSSGAGTS VHPPRPRPPP  480
WPGSGQHPPS TSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-22246304463ATERF1
3gcc_A5e-22246304463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247ERRRKY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062103.11e-129PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLA0A059BU341e-127A0A059BU34_EUCGR; Uncharacterized protein
STRINGXP_010062103.11e-128(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-21ethylene response factor 110