PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC036825.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 195aa MW: 22560.5 Da PI: 7.1471 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.9 | 3.5e-08 | 144 | 177 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + EcC036825.20 144 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 177 469*****************************87 PP | |||||||
2 | ELK | 29.1 | 2.3e-10 | 98 | 119 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ EcC036825.20 98 ELKHELKQGYKEKIIDIREEIL 119 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 4.6E-13 | 1 | 41 | IPR005541 | KNOX2 |
Pfam | PF03791 | 8.6E-13 | 2 | 40 | IPR005541 | KNOX2 |
SMART | SM01188 | 0.0024 | 98 | 119 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.865 | 98 | 118 | IPR005539 | ELK domain |
Pfam | PF03789 | 3.8E-5 | 98 | 119 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.855 | 118 | 181 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.67E-16 | 120 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.2E-11 | 120 | 185 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.46E-11 | 121 | 182 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 125 | 182 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.2E-18 | 138 | 177 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
THYVLLLCSF KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GVSPGEGTGA TMSDDEDDQV 60 DSDANLFDVS LDGTDSLGFG PLIPTETERS LMERVRQELK HELKQGYKEK IIDIREEILR 120 KRRAGKLPGD TTSVLKQWWQ THSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH 180 SNPSTSTVLK SKRKR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 7e-13 | 121 | 185 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 174 | 194 | RKRNWHSNPSTSTVLKSKRKR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010048923.1 | 1e-142 | PREDICTED: homeobox protein knotted-1-like 3 isoform X2 | ||||
Refseq | XP_018726678.1 | 1e-142 | PREDICTED: homeobox protein knotted-1-like 3 isoform X3 | ||||
Swissprot | P48000 | 1e-130 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A059CS96 | 1e-141 | A0A059CS96_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059CT02 | 1e-141 | A0A059CT02_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059CT33 | 1e-141 | A0A059CT33_EUCGR; Uncharacterized protein | ||||
STRING | XP_010048922.1 | 1e-141 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-125 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|