PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC036728.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 383aa    MW: 41769.6 Da    PI: 8.6929
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC036728.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.22.1e-18288186
      trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                  +W++  + +L+ea++e+ ++l+rg+l++ +Weev+  +  r  + ++s +qCk+k +nl+kryk +++++ ++   s+s++p+f++le
  EcC036728.30  2 EWSDAAIACLLEAYTEKFTQLNRGNLRGRDWEEVATTVseRCDKQTKSVEQCKNKVDNLKKRYKLERHRMTNG-GISVSHWPWFKKLE 88
                  5*************************************666668899************************99.67778*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.1E-21290No hitNo description
Gene3DG3DSA:3.40.1160.101.4E-73134376IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.84142377IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.57E-59143376IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042544.28E-125145377No hitNo description
PfamPF006962.6E-27146356IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0009733Biological Processresponse to auxin
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
EEWSDAAIAC LLEAYTEKFT QLNRGNLRGR DWEEVATTVS ERCDKQTKSV EQCKNKVDNL  60
KKRYKLERHR MTNGGISVSH WPWFKKLEEI VGNSLPVKSP SEDDKGGAAS ATSVKQSKRH  120
AVVTTCQGNP VNNIKSKSLS NPRWRRVVFK ISGAALAGTG QNNIDPKVAM SIAREVMMAC  180
RLGVQVAIVV GGRNFFCGNT WVTATGLDRC TAYQIGMMAT VMNSVLLQSA LEKMGVQTRV  240
QSAFPMQEVA EPYSRQRAIR HLEKGRVVIF GGIGAGTGNP LFSTDTAAAL RASEIHAEAL  300
LKGTNVDGVY DCNSQDNNVT FDHITYRDMG ARGATSIDMM ALTFCEDNGI PVVVFNLLEA  360
GNISRALCGD QVGTLIDQAG RIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A7e-681363761239Uridylate kinase
3ek5_B7e-681363761239Uridylate kinase
3ek5_C7e-681363761239Uridylate kinase
3ek5_D7e-681363761239Uridylate kinase
3ek5_E7e-681363761239Uridylate kinase
3ek5_F7e-681363761239Uridylate kinase
3ek6_A7e-681363761239Uridylate kinase
3ek6_B7e-681363761239Uridylate kinase
3ek6_C7e-681363761239Uridylate kinase
3ek6_D7e-681363761239Uridylate kinase
3ek6_E7e-681363761239Uridylate kinase
3ek6_F7e-681363761239Uridylate kinase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018730296.10.0PREDICTED: annexin B11
SwissprotQ8DM634e-80PYRH_THEEB; Uridylate kinase
TrEMBLA0A059DFT90.0A0A059DFT9_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010069051.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein