PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC036542.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 356aa    MW: 41037.6 Da    PI: 10.3739
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC036542.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.8e-1519109299
                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   fk+   sd+l+sg l++pk+f++++g+    + +l l+      W v+l  +k+++r+++ kGW++F +   ++ g  +vF+l+g s f  +v +f+
  EcC036542.10  19 FKII-LSDTLQSGKLMIPKRFVAKYGHR--LPNQLLLKVVGDANWPVEL--EKSDDRVWICKGWRNFLDYYSINLGNLIVFRLEGASFF--HVLIFN 108
                   4444.59******************966..7889***************..********************************997888..999987 PP

                   S CS
            B3  99 k 99 
                   +
  EcC036542.10 109 E 109
                   5 PP
2B344.43e-142733551699
                   EE--HHH.HTT..---..--SEEEEEET....TS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3  16 lvlpkkfaeeh..ggkkeesktltlede....sgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   + +p  f+++   +        l++ed     +grsW+vk+   ++++r    +++GW  F+ +n L++gD++vF+l++++   ++v++fr+
  EcC036542.10 273 VNVPSGFLKSQirK-------SLVVEDAtlefRGRSWTVKF--FNYPKRycGKFSAGWAMFATDNSLCTGDVCVFELIKKTPMVFRVSIFRR 355
                   55666776554321.......3444443111167*******..555555222478**********************977666669999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2213110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-2313109IPR015300DNA-binding pseudobarrel domain
CDDcd100177.33E-1816108No hitNo description
PROSITE profilePS5086313.29617110IPR003340B3 DNA binding domain
SMARTSM010199.8E-1318110IPR003340B3 DNA binding domain
PfamPF023623.4E-1119108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-16251355IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-13252355IPR015300DNA-binding pseudobarrel domain
CDDcd100177.94E-12257354No hitNo description
PROSITE profilePS5086312.139258356IPR003340B3 DNA binding domain
SMARTSM010199.5E-6259356IPR003340B3 DNA binding domain
PfamPF023622.0E-10274355IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNVSRRRKGY EPRETPHFFK IILSDTLQSG KLMIPKRFVA KYGHRLPNQL LLKVVGDANW  60
PVELEKSDDR VWICKGWRNF LDYYSINLGN LIVFRLEGAS FFHVLIFNES ASEIEYPRKP  120
IAPAKLLDPE MVKIDDVSTE LGEHIVLPGE RRELKSPLCS ASPDRLMMKS NLVRKDRSKS  180
YASLLTPHFE SKGSHSGDRR TSKLKKNVHS YCSSRYSGRI KESEKRATPF EQIRLSSRCP  240
NPPDALKKAR KFKSEHPSFL IVVRCCYPEH SNVNVPSGFL KSQIRKSLVV EDATLEFRGR  300
SWTVKFFNYP KRYCGKFSAG WAMFATDNSL CTGDVCVFEL IKKTPMVFRV SIFRRA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718145.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A059AKX01e-102A0A059AKX0_EUCGR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-35B3 family protein