PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC036498.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 314aa    MW: 35164.2 Da    PI: 4.8172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC036498.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-20107156254
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                   +ykGVr++k +g+W+AeIrdp  +g  +r++lg++ t+eeAaka++a r+++e
  EcC036498.10 107 RYKGVRQRK-WGKWAAEIRDPFHRG--TRIWLGTYNTPEEAAKAYEAKRLEFE 156
                   69******9.**********75554..***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.4E-18107162IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-18107155IPR016177DNA-binding domain
PfamPF008473.3E-14107157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-22107155IPR001471AP2/ERF domain
CDDcd000183.55E-22107155No hitNo description
PROSITE profilePS5103220.495107171IPR001471AP2/ERF domain
PRINTSPR003673.6E-10108119IPR001471AP2/ERF domain
PRINTSPR003673.6E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSGPCQPFDK RSSLKKARDS RMVRKIRVFC RDPDATDLSS SEDESDQIDE KLFVRLIDLP  60
LPVVHPHVID TECSSLDTIS DVKNRHKKRK LSQKGDLISK RRPANLRYKG VRQRKWGKWA  120
AEIRDPFHRG TRIWLGTYNT PEEAAKAYEA KRLEFEASVK ASSDEKKTKT PSPETSLSMN  180
KPVASGNSES ASSRTSPSSL LDSGTSASNA SESCDVSTER SNEQQTPAQI ACVEEILMPS  240
EAVQDFSLGN DFDMLFMDDF GQLVDDFCGA DDFQMFGFGN ETSELPDFDF DIGNDDLGHW  300
MEERPINIAC TSVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-13108158353ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044266.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
TrEMBLA0A218WU854e-77A0A218WU85_PUNGR; Uncharacterized protein
STRINGXP_010044266.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-26ERF family protein