PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC036289.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 271aa    MW: 30939.6 Da    PI: 8.1963
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC036289.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.21.5e-4045122178
                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                   +CqvegC++ l +akeyhrrhkvCe hskap v+v gleqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk+++
  EcC036289.20  45 RCQVEGCHVALGDAKEYHRRHKVCESHSKAPRVVVLGLEQRFCQQCSRFHQVSEFDDAKRSCRRRLAGHNERRRKSSH 122
                   6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.2E-3540107IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.343120IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-3844124IPR004333Transcription factor, SBP-box
PfamPF031108.1E-3246119IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0005634Cellular Componentnucleus
GO:0031012Cellular Componentextracellular matrix
GO:0003677Molecular FunctionDNA binding
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
RGRADPHLTC LHLGKRRCFE SERAVGDRRC KTHHGGGAAA AAVPRCQVEG CHVALGDAKE  60
YHRRHKVCES HSKAPRVVVL GLEQRFCQQC SRFHQVSEFD DAKRSCRRRL AGHNERRRKS  120
SHDSVPSYSS QECVXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXEAQNG SALLFPHEHQ ELPEPHCWER FQEEPGTHVT LDLMQAPSSA  240
FGLLSMRGKA KAKDEEECSD IWNSFASTHV V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-3136119184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053955.15e-81PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A059CJH61e-79A0A059CJH6_EUCGR; Uncharacterized protein
STRINGXP_010053955.12e-80(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.11e-35squamosa promoter binding protein-like 3