PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC036030.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 166aa MW: 18478.1 Da PI: 10.7007 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.4e-14 | 1 | 40 | 9 | 48 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 d++l+d+v+++G g+W++ ++ g+ R++k+c++rw++yl EcC036030.10 1 DQKLIDYVQKHGEGNWNSLPKAAGLLRCGKSCRLRWLNYL 40 79**********************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.5e-17 | 46 | 91 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l EcC036030.10 46 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 91 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 3.10E-8 | 1 | 40 | No hit | No description |
Pfam | PF00249 | 2.4E-12 | 1 | 40 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-19 | 1 | 47 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.1 | 1 | 40 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0017 | 1 | 42 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.91E-25 | 1 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.246 | 41 | 95 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-16 | 45 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-16 | 46 | 91 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-26 | 48 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.10E-11 | 48 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
DQKLIDYVQK HGEGNWNSLP KAAGLLRCGK SCRLRWLNYL RPDLKRGNFG EDEEDLIIKL 60 HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLLSKGI IHRRPSAAKI KSSTEDKTVH 120 QSSAAISIKE KGVSPDGDRL DLKLGVSGGP AKHSKPAQSK EINGGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 1 | 95 | 35 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010032684.1 | 1e-116 | PREDICTED: myb-related protein 308 | ||||
Swissprot | Q38851 | 2e-59 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A059CZV3 | 1e-114 | A0A059CZV3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010032684.1 | 1e-115 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 7e-62 | myb domain protein 6 |