PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC035781.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 406aa MW: 46359.9 Da PI: 9.3334 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 204.4 | 6.8e-63 | 166 | 398 | 2 | 241 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++lL++c +av+s+d++ a+alL++++++asp g+ +qRla+yf+++L+arla+++s++y+ l ++t+ ++ + ++P+ + s + EcC035781.10 166 RTLLIRCTQAVASNDHRSANALLNEIKKHASPFGNWTQRLAHYFANGLEARLAGTGSQIYRGLVNRKTTAADMLCN-------IPACPFQRYSTTVS 255 689************************************************************9999984333333.......467*********** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 +++ + v+ + r+HiiDf+i +G+ Wp+L+q L++Rp + +lRiTg++ p++g +++++e+g+rLa++Ae+++vpfe+n+ +akr+e +elee EcC035781.10 256 RRMVIDTVADKMRIHIIDFGILYGFRWPSLIQRLSQRPCP-RKLRITGIDLPQPGfkPAQRIKEMGRRLANYAESFNVPFEYNA-IAKRWEFIELEE 350 *************************************875.89***********999***************************.7*********** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 L+++++E+++Vn++++ ++l+de+ + es+rd vL+l+++ +P+++++ EcC035781.10 351 LKIDRDEVTIVNCMFRFENLFDETIAEESPRDIVLNLIRRAQPDLFIH 398 ********************************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.877 | 139 | 406 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-60 | 166 | 398 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 406 aa Download sequence Send to blast |
NYGTMSFERD ISTAAFQPNQ GGNAERLDLC SESRIVRQFR MGVEESNKFL PNQATTELLY 60 QEPHGKIDKV DRLGALKRKE SLYREEGNME ERSSTQAFVH EESVLRSNAF DVILLNSQGE 120 GLAHLMNLRA SLKHRENEIA HKIEEPKGGK GRGKKKSGKV EVVDVRTLLI RCTQAVASND 180 HRSANALLNE IKKHASPFGN WTQRLAHYFA NGLEARLAGT GSQIYRGLVN RKTTAADMLC 240 NIPACPFQRY STTVSRRMVI DTVADKMRIH IIDFGILYGF RWPSLIQRLS QRPCPRKLRI 300 TGIDLPQPGF KPAQRIKEMG RRLANYAESF NVPFEYNAIA KRWEFIELEE LKIDRDEVTI 360 VNCMFRFENL FDETIAEESP RDIVLNLIRR AQPDLFIHGV INGTHC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-24 | 169 | 374 | 8 | 218 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010039205.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
TrEMBL | A0A059A778 | 0.0 | A0A059A778_EUCGR; Uncharacterized protein | ||||
STRING | XP_010039205.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-104 | GRAS family protein |