PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC035781.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 406aa    MW: 46359.9 Da    PI: 9.3334
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC035781.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS204.46.8e-631663982241
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++lL++c +av+s+d++ a+alL++++++asp g+ +qRla+yf+++L+arla+++s++y+ l  ++t+  ++  +         ++P+ + s  + 
  EcC035781.10 166 RTLLIRCTQAVASNDHRSANALLNEIKKHASPFGNWTQRLAHYFANGLEARLAGTGSQIYRGLVNRKTTAADMLCN-------IPACPFQRYSTTVS 255
                   689************************************************************9999984333333.......467*********** PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                    +++ + v+ + r+HiiDf+i +G+ Wp+L+q L++Rp +  +lRiTg++ p++g   +++++e+g+rLa++Ae+++vpfe+n+ +akr+e +elee
  EcC035781.10 256 RRMVIDTVADKMRIHIIDFGILYGFRWPSLIQRLSQRPCP-RKLRITGIDLPQPGfkPAQRIKEMGRRLANYAESFNVPFEYNA-IAKRWEFIELEE 350
                   *************************************875.89***********999***************************.7*********** PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                   L+++++E+++Vn++++ ++l+de+ + es+rd vL+l+++ +P+++++
  EcC035781.10 351 LKIDRDEVTIVNCMFRFENLFDETIAEESPRDIVLNLIRRAQPDLFIH 398
                   ********************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.877139406IPR005202Transcription factor GRAS
PfamPF035142.4E-60166398IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
NYGTMSFERD ISTAAFQPNQ GGNAERLDLC SESRIVRQFR MGVEESNKFL PNQATTELLY  60
QEPHGKIDKV DRLGALKRKE SLYREEGNME ERSSTQAFVH EESVLRSNAF DVILLNSQGE  120
GLAHLMNLRA SLKHRENEIA HKIEEPKGGK GRGKKKSGKV EVVDVRTLLI RCTQAVASND  180
HRSANALLNE IKKHASPFGN WTQRLAHYFA NGLEARLAGT GSQIYRGLVN RKTTAADMLC  240
NIPACPFQRY STTVSRRMVI DTVADKMRIH IIDFGILYGF RWPSLIQRLS QRPCPRKLRI  300
TGIDLPQPGF KPAQRIKEMG RRLANYAESF NVPFEYNAIA KRWEFIELEE LKIDRDEVTI  360
VNCMFRFENL FDETIAEESP RDIVLNLIRR AQPDLFIHGV INGTHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-241693748218GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039205.10.0PREDICTED: scarecrow-like protein 9
TrEMBLA0A059A7780.0A0A059A778_EUCGR; Uncharacterized protein
STRINGXP_010039205.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-104GRAS family protein