PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC035153.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 327aa MW: 35348.4 Da PI: 9.0987

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC035153.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.3	3.5e-38	69	127	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+n+k+s EcC035153.10 69 GPLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRS 127 5789**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-32	55	123	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.0E-32	70	125	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.376	71	125	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	73	109	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDFPSLPPYL DPSNWQQQQT DHHQTGNSST NTQLLPPPPQ PNGGGGASSI RPRLMADEAR 60 LANITMPEGP LKCPRCESTN TKFCYFNNYS LSQPRHFCKT CRRYWTRGGA LRNVPVGGGC 120 RRNNKRSKSG SSKSVASSSH RQITAPRSGS TCIPTSNGGA NVDTTEILGV GTQLPPLGHF 180 MAPLHYLPDN LTLSAGAGLN YNTGVPPPLG DLNFLAATTC DGGALERWRL EQAQQLSSSG 240 RLDPNLGLYP SEGRFESFRA LNVRPNAPPS SAGLTAQLSS SVKMEDNNQP FSRQFYGINH 300 ENHPFLSSAS AWMDLSGFSS SSTRNPL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010047599.1	0.0	PREDICTED: dof zinc finger protein DOF2.4
TrEMBL	A0A059DDX9	0.0	A0A059DDX9_EUCGR; Uncharacterized protein
STRING	XP_010047599.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	1e-47	DNA binding with one finger 2.4