PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC035139.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 175aa MW: 20376.5 Da PI: 8.496 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52 | 1.3e-16 | 40 | 133 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv +++++ +++ + +p+ f+++h + + ++++ s+r+W vkl r+++++ + +++GW Fv+ +L +g ++vF+l++r++ ++v EcC035139.10 40 FFKVVIRPSYIEHHVVNVPRWFIRQHiQ-Q---IMEIVTLRHSNRTWLVKL--RNYPSGlMQFSSGWIAFVRGTHLHVGNVCVFELINRDDIVFRVY 130 99************************43.3...367888888*********..9999998889************************9999988999 PP EE- CS B3 96 vfr 98 +f+ EcC035139.10 131 IFS 133 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-20 | 33 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.35E-19 | 34 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.7E-9 | 40 | 135 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.717 | 40 | 135 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-14 | 40 | 134 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.37E-15 | 40 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
GIGQSRCRAS HPEPNFGGPM SSGPLRSFEL ACEFDSEYPF FKVVIRPSYI EHHVVNVPRW 60 FIRQHIQQIM EIVTLRHSNR TWLVKLRNYP SGLMQFSSGW IAFVRGTHLH VGNVCVFELI 120 NRDDIVFRVY IFSSAGGNLI YVIYSETLGW LWHDMTSMLM IFIVNQRNIH SDNVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 4e-14 | 26 | 132 | 34 | 140 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 4e-14 | 26 | 132 | 34 | 140 | B3 domain-containing transcription factor VRN1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010065661.1 | 6e-87 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Refseq | XP_010065663.1 | 2e-87 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X4 | ||||
TrEMBL | A0A059BB47 | 1e-87 | A0A059BB47_EUCGR; Uncharacterized protein | ||||
STRING | XP_010065661.1 | 2e-86 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14804 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-15 | B3 family protein |