PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC034260.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 360aa    MW: 42265.1 Da    PI: 10.1054
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC034260.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.1e-112781899
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  +p +f e + +  e + t++++ +sg++W  kl  +k  ++ +v  +GW++F ++n L   +f++F +dg++ f  +v+vf+ 
  EcC034260.10  2 IPQEFSELYHH--ELPDTVIFKALSGNEWPAKL--QKDIDSvCVQDDGWQNFYRDNALGNSEFLIFWYDGKKYF--NVQVFDP 78
                  89999988864..48889***************..77777758888**********************998888..9999985 PP
2B362.66.6e-20266353598
                   -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   + +s v k + l +p kfa+eh +   + + ++l+d +g++W+v +    +++r+++++GW+ F  +n+Lk gD+++F++  r+e+e +v+++r
  EcC034260.10 266 MRRSIVEKAKPLPVPSKFAKEHFLW--RRTNIVLRDAEGQTWKVAH--HCNGKRHYFSRGWRAFLYDNELKIGDVCIFEV--RKEKEVRVHLYR 353
                   55666777788999********877..4457***************..7777889************************5..466667888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.042179IPR003340B3 DNA binding domain
CDDcd100172.98E-8177No hitNo description
SuperFamilySSF1019365.69E-15179IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.351179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-14180IPR015300DNA-binding pseudobarrel domain
PfamPF023626.4E-9277IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-25255353IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-25255353IPR015300DNA-binding pseudobarrel domain
CDDcd100174.11E-19260353No hitNo description
SMARTSM010196.6E-9261355IPR003340B3 DNA binding domain
PROSITE profilePS5086315.27262355IPR003340B3 DNA binding domain
PfamPF023622.7E-17262353IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
RIPQEFSELY HHELPDTVIF KALSGNEWPA KLQKDIDSVC VQDDGWQNFY RDNALGNSEF  60
LIFWYDGKKY FNVQVFDPTG VERLNVDPSK HRPRGGPRKH PVGSQNIPLS KSPNSHDCST  120
LPLMFLILRH TDGRKRTKSY RLHWAGKHNP ELEQNRLEKI QVEERLSELK EGKDLPDVRM  180
SSDPGKHKNK NKQRQVKAEK IAPHFPICQS RLRCRHLEKR LRCRHLEKNA STSEENKNAS  240
TSEENARLEA VKETFTSDFP FFMSYMRRSI VEKAKPLPVP SKFAKEHFLW RRTNIVLRDA  300
EGQTWKVAHH CNGKRHYFSR GWRAFLYDNE LKIGDVCIFE VRKEKEVRVH LYRLPGTSAI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030658.20.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A059APE40.0A0A059APE4_EUCGR; Uncharacterized protein
STRINGXP_010030658.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2065625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.24e-12B3 family protein