PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033920.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 683aa    MW: 76307.4 Da    PI: 7.1997
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033920.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3672.7e-21138238198
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt+sd++++g  +lpk+ a+e+       +  ++  ++l+ +d++g+ W +++iyr+k++r++lt+GW++F  +++L +gD ++F  +g +++
  EcC033920.50 138 FVKILTQSDTSTHGGCSLPKRPADEClpsldksQ--HHPVQDLVTKDLQGNLWCFRHIYRGKPERHLLTRGWSDFLTSKKLVTGDACIFL-SG-RDG 230
                   89**************************999543..444458***********************************************9.33.566 PP

                   ..EEEEE- CS
            B3  91 elvvkvfr 98 
                     +++v+r
  EcC033920.50 231 DVRIGVRR 238
                   56888876 PP
2Auxin_resp96.92.9e-32264346183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   a ha+st+++F+v+Y+P+a++s F++ +++++ka+ + +s+G Rf+m+fe e + e+rl Gtvvg++dld++rWp+S W++Lk
  EcC033920.50 264 ALHAVSTGTMFTVYYRPWACASGFIIGYQQYMKAMANDYSIGKRFRMQFEDELCGEQRLGGTVVGIEDLDQMRWPGSDWKCLK 346
                   689******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-34130251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.27E-27130266IPR015300DNA-binding pseudobarrel domain
CDDcd100173.89E-19136238No hitNo description
SMARTSM010193.0E-14138240IPR003340B3 DNA binding domain
PROSITE profilePS5086311.307138240IPR003340B3 DNA binding domain
PfamPF023629.1E-19138238IPR003340B3 DNA binding domain
PfamPF065073.2E-29264346IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004499Molecular FunctionN,N-dimethylaniline monooxygenase activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding
GO:0050661Molecular FunctionNADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MSVMFPRRHC SPPFHFRTQV EFLYCDAGRG DNLHEQLWHA CAGPLAYVPK AGETVFYFPQ  60
GHIEQIEAYT NQDGDMEMPI YKLPSKILCK VVCVQLKAEI HTDEVFAQVS LIPEAKKDEV  120
NPNCKTSATP PRDNSRFFVK ILTQSDTSTH GGCSLPKRPA DECLPSLDKS QHHPVQDLVT  180
KDLQGNLWCF RHIYRGKPER HLLTRGWSDF LTSKKLVTGD ACIFLSGRDG DVRIGVRRLM  240
KSQTTTSSSI LSGHSMRHGI LASALHAVST GTMFTVYYRP WACASGFIIG YQQYMKAMAN  300
DYSIGKRFRM QFEDELCGEQ RLGGTVVGIE DLDQMRWPGS DWKCLKVQWD SSRVKCICPE  360
RVSPWDIESL DPDGKKQAVL PTSLKRTRPC SLQLDWPPTF VMDESQWTSV APKSQRQPGV  420
FQGQEKSCLP INESNPPCPL PLVPCFHTPI QHVQLASQHQ IHLAVHNASH QHPESAFLVG  480
DGGKRESRGP GDHWPPASIA PGCNPVKSLP AEDVMPANST SWEARTTFET KDDNEKTLAQ  540
TNRFGKCKVF GVSLADDTSE LPSLQVSNSS ELSSPSSVPP LSKSSNFVQV IINETARGRP  600
ADLSPFKDYD KFIHRLDQLF YFGGNLIGRS SGWHEKCTDD KGDSVPIRDY NREFVSMVHQ  660
GLICPKEEEQ GKQGPCSSDV VSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1193137117356Auxin response factor 1
4ldw_A1e-1193137117356Auxin response factor 1
4ldw_B1e-1193137117356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720535.10.0PREDICTED: auxin response factor 24
SwissprotK4DF011e-130ARF2B_SOLLC; Auxin response factor 2B
TrEMBLA0A059A8K90.0A0A059A8K9_EUCGR; Auxin response factor (Fragment)
STRINGXP_010039271.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157971016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-123auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]