PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC033684.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 161aa MW: 18248.1 Da PI: 7.4361 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.5e-18 | 32 | 83 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdps ng +r +lg+f taeeAa a+++a+ +++g+ EcC033684.20 32 RYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAACAYDRAAFAFRGH 83 7********.**********98887..*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.4E-35 | 32 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-23 | 32 | 91 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.58E-28 | 32 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-31 | 32 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-12 | 32 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.329 | 32 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-11 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-11 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MKGSSSRGNR NNENNEEMVK KRGSRLQCDQ NRYRGIRRRP WGKFAAEIRD PSRNGARLWL 60 GTFETAEEAA CAYDRAAFAF RGHLAILNFP NEQQYYAQND YNVSGHRSYF SASPSLSSSS 120 FSACSSSTTE LAPAEPSRDV IEFEYLDDKL LEELLMSHSS I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-29 | 23 | 150 | 5 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010045996.1 | 2e-81 | PREDICTED: ethylene-responsive transcription factor ERF098 | ||||
Swissprot | Q9LTC5 | 2e-44 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A059D2K5 | 3e-72 | A0A059D2K5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010045996.1 | 9e-81 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 3e-27 | ERF family protein |
Publications ? help Back to Top | |||
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