PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC033507.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 405aa MW: 43499.9 Da PI: 5.3919 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 8.2e-18 | 58 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g EcC033507.10 58 TRYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 108 68********.**********93....35999**********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.6E-11 | 58 | 108 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.58E-29 | 58 | 115 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-29 | 59 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-21 | 59 | 116 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.049 | 59 | 116 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-32 | 59 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 60 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 405 aa Download sequence Send to blast |
MEDAIRRLNG ATQNPETNPT ETTFPDHPKK PSTTATATAT ANPNKRALRD GPPSGGATRY 60 RGVRRRPWGR YAAEIRDPQS KERRWLGTFD TAEEAACAYD CAARAMRGIK ARTNFVYPNS 120 PPPLPHSAHH HHLFNYSKQS ASSQTFRGFP IGSRSSWQST LATGGDFNLA ASQRSVAGSS 180 GLDMLLLRDF LNPSPSATTG SLYSPYGHFP NLQTLTTSTP ITFSAGSLVS PSTGNPCSST 240 SSMNLHLAED HQICPVESPV SASISTIAST TTENHKQDVE QLFTQEYSSG NSGLLEEVIE 300 RFFPKPSSPP KSQPTCSSAT AEEPAASVEC SAAGSEYASD STASLEQLES FDILAAAGPQ 360 ATALWGEWPE SGLQMLQDQY SLFEDVLQCP DYVMSSFAAA TVENA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-19 | 59 | 115 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010046634.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2-like | ||||
STRING | XP_010046634.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G24590.1 | 1e-12 | DORNROSCHEN-like |