PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033411.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 688aa    MW: 75207.3 Da    PI: 7.3805
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033411.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.8e-12322378155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  EcC033411.10 322 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDKEEKAARAYDLAALKYWG 378
                   78*******************77776664446655.779999**************98 PP
2AP245.61.8e-14423472355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  EcC033411.10 423 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 472
                   9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.26E-19322386No hitNo description
SuperFamilySSF541711.31E-14322388IPR016177DNA-binding domain
PfamPF008477.2E-9322378IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-12323387IPR001471AP2/ERF domain
PROSITE profilePS5103217.425323386IPR001471AP2/ERF domain
SMARTSM003805.2E-23323392IPR001471AP2/ERF domain
PRINTSPR003674.5E-6324335IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-17421482IPR016177DNA-binding domain
CDDcd000186.37E-25421482No hitNo description
Gene3DG3DSA:3.30.730.104.4E-18422480IPR001471AP2/ERF domain
SMARTSM003807.5E-34422486IPR001471AP2/ERF domain
PROSITE profilePS5103219.177422480IPR001471AP2/ERF domain
PfamPF008473.0E-9423472IPR001471AP2/ERF domain
PRINTSPR003674.5E-6462482IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MKSVSENGGG ASGGNWLGFS LSPHHLKMEV APQAEHHQNH HHHHQYHHQP QQGEPGNYFL  60
SAPPPPPHYS SSGLCYGGGV GDNNNGGYLH SPLSVMPLKS DGSLCIMEAL TRSRPQGLGQ  120
GSTPKLEDFL GGASATVTAT TVPLSLDSLY SYQQSADPEK QSLDLLNEPF RHQQQHQIYY  180
PNELTCPALY HSPLAEEEPK DTHIASCDEN SGFSCLKSWV TRNFSSSSCH VGLDQMSSGM  240
VCHNGGNSSE AVGPMECGDL QNLSLSMSPS STSSCVTVPT RQISPTENEC VGMEMTKKRS  300
SNCHNKQPVH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRKGRQGGYD  360
KEEKAARAYD LAALKYWGPS THINFPLENY QKELEEMKNM SRQEYVAHLR RKSSGFSRGA  420
SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGVNAVTNFD  480
ISRYDVERIM ASSTLLAGEL ARRTKETAPN EEVAEYNALT QQKIGSDGTL QLESSGHVTN  540
GSDWKMVLYH SSPQLQASCN QSLDHNSVGC PSGGGNYRNS SFSMALHDLI GMESSVNSSQ  600
PSVDDPAKLG TRHLSNPSSL VTSLSSSREA SPDRAGSAFA NKPPIVSKLV NASPTSASVT  660
SWLPSPAHMR PSAIAMSHLP VFAAWNDT
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061622.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X1
SwissprotQ84Z021e-144CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A059BRN10.0A0A059BRN1_EUCGR; Uncharacterized protein
STRINGXP_010061621.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31372863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-122AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]