PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC033234.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 149aa MW: 17304.8 Da PI: 10.1131 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.4e-15 | 19 | 65 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+W++eEd++lv ++k++G +W+ a+ g+ Rt+k+c++rw +yl EcC033234.10 19 GAWSAEEDQKLVAYIKRYGIWNWTHMAEPAGLARTGKSCRLRWMNYL 65 89*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.8e-17 | 72 | 114 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+ T+eE+e+++++++ lG++ W++Ia++++ gRt++++k++w++ EcC033234.10 72 GNITQEEEEIIINLHRVLGNR-WASIASRLP-GRTDNEIKNYWNT 114 678******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.128 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-29 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-10 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-13 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.37E-9 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 23.451 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-16 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 72 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 73 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 149 aa Download sequence Send to blast |
MARFPRVDKS NSKKTVKTGA WSAEEDQKLV AYIKRYGIWN WTHMAEPAGL ARTGKSCRLR 60 WMNYLRPNIK HGNITQEEEE IIINLHRVLG NRWASIASRL PGRTDNEIKN YWNTRLKKCF 120 LMENLQMPTA CDVKVNSNHN DPLSCQDSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-31 | 19 | 118 | 8 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010030551.1 | 1e-107 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 3e-45 | MYB08_ANTMA; Myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 4e-45 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A059CB38 | 1e-94 | A0A059CB38_EUCGR; Uncharacterized protein | ||||
STRING | XP_010030551.1 | 1e-107 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-42 | myb domain protein 5 |