PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC033144.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 244aa MW: 28268.6 Da PI: 5.469 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.5e-14 | 139 | 183 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+ E+el++++ +++G+g+Wk+I+r k+R + q+ s+ qky EcC033144.10 139 AWSRKEHELFLEGLEKYGKGDWKSISRNCVKTRNPTQVASHAQKY 183 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.646 | 26 | 80 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.0E-4 | 30 | 82 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.44E-5 | 33 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.36E-4 | 34 | 80 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-10 | 131 | 186 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.189 | 132 | 188 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.44E-16 | 132 | 189 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-14 | 135 | 186 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.9E-9 | 136 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.75E-9 | 139 | 184 | No hit | No description |
Pfam | PF00249 | 2.4E-10 | 139 | 183 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042256 | Biological Process | mature ribosome assembly | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0043022 | Molecular Function | ribosome binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MESQYFFEVT PPGYSYLTYL LSPPTPPEPI EDHWTSEENE IFERCIAELD HLSRDFFENI 60 ALRIPEKSVG QIQRHFEALV KDVENIDAGR VPIPDYDGSE SKVDEKEKPS DEPEKEKPSD 120 EPLEEDHSTP QTTKKRGIAW SRKEHELFLE GLEKYGKGDW KSISRNCVKT RNPTQVASHA 180 QKYFKRLKNN SDRRRFSRLI DPLALPSSSE AIDRPSILMP SLQLASIVSR RRIGYSLSYY 240 QSYS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034716.1 | 1e-173 | PREDICTED: transcription factor DIVARICATA-like | ||||
STRING | XP_010034716.1 | 1e-173 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-39 | MYB family protein |