PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC033125.50

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 734aa MW: 82980.5 Da PI: 6.4748

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC033125.50	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	344	2.4e-105	359	731	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL+ cA+avs+ d++ a++lL ++++ +sp+gd qR+a+yf+ +L+arla+ + + ++a++ s ++++ ++++ a++l + ++P+ +f+ l EcC033125.50 359 LRSLLTLCAQAVSTYDFKTARELLRQIRQDSSPTGDGSQRIAHYFADGLEARLAG-SIGSSQAFHYSVIEKRSLADKVRAYQLHYSTCPFTRFQILF 454 6899*************************************************.55666778888888889******************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N Il+++e+++ +Hi+Df+i+ G+QWp L+q+L++R++g +lRiTg++ p+sg +e++e tg+rLak++++++ +fef+++++ ++e++++ EcC033125.50 455 SNYVILKSAETAKVLHIVDFGINFGFQWPILIQELSKRTGGVTKLRITGIELPQSGfrPAERIEGTGHRLAKYCKRFH-TFEFQAVASASWECIRVA 550 ***************************************************9*****************8.7*9999**** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +L++++gE++aVn+ + ++l+de+v+++ +rd vL+l+ks++P+v+v+ ++ ++n++ F +rf eal + s+++d++++++ r++ +r ++Er + EcC033125.50 551 DLKIQKGEVVAVNCLSRFEYLYDETVEVNCQRDMVLSLIKSMKPHVFVHGIRNGSYNAPFFITRFREALFHLSTMYDMFNTTVDRANAQRLVLERDF 647 ********************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +grei+n+vaceg er+er et+++W+ rl+++GF+++pl+++ k+a++ l+ + + ++++ee+++++l W++ + +++W EcC033125.50 648 FGREIMNIVACEGLERVERPETYKQWQVRLNRVGFQQLPLDQELIKKARAKLSGDYHKDFMLDEENNWILLSWRGGIISGCTCW 731 *************************************************999888*********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.195	333	712	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.4E-103	359	731	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MTSLSCQPEL KYNGPSLPIN LDGDLVLPST NKRPNLGMIC CSTSSSESPN KGEESLSLSV 60 HSNSTDPVLK HINQMLMEEN MEEQPWVIPN IVALRHTEKS LYDALGKKYP DSPEQTEQVD 120 TNPVINSSSW SPWGSSGGQG SNGTTSTSSN SFHPLDLDTH DDLEGNDYAF IHAKSPGDVV 180 LQSNADGKFQ SPINYVNYLP KYGDKFYYSV PSELLIGHIF NNNESVLQFN RGLVEARKFI 240 PSSIYIDQEK EGLAPTISEK EEIGIDGTNQ SENGSRGRKN HERHYAIFEE GRATKQLALD 300 NEDYELSDLL ERLLLSNKNG GLLSLECKSE KSIETKDLHG PNGTWDHSKK KEYKSTSDLR 360 SLLTLCAQAV STYDFKTARE LLRQIRQDSS PTGDGSQRIA HYFADGLEAR LAGSIGSSQA 420 FHYSVIEKRS LADKVRAYQL HYSTCPFTRF QILFSNYVIL KSAETAKVLH IVDFGINFGF 480 QWPILIQELS KRTGGVTKLR ITGIELPQSG FRPAERIEGT GHRLAKYCKR FHTFEFQAVA 540 SASWECIRVA DLKIQKGEVV AVNCLSRFEY LYDETVEVNC QRDMVLSLIK SMKPHVFVHG 600 IRNGSYNAPF FITRFREALF HLSTMYDMFN TTVDRANAQR LVLERDFFGR EIMNIVACEG 660 LERVERPETY KQWQVRLNRV GFQQLPLDQE LIKKARAKLS GDYHKDFMLD EENNWILLSW 720 RGGIISGCTC WVSP

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MTSLSCQPEL KYNGPSLPIN LDGDLVLPST NKRPNLGMIC CSTSSSESPN KGEESLSLSV  60
HSNSTDPVLK HINQMLMEEN MEEQPWVIPN IVALRHTEKS LYDALGKKYP DSPEQTEQVD  120
TNPVINSSSW SPWGSSGGQG SNGTTSTSSN SFHPLDLDTH DDLEGNDYAF IHAKSPGDVV  180
LQSNADGKFQ SPINYVNYLP KYGDKFYYSV PSELLIGHIF NNNESVLQFN RGLVEARKFI  240
PSSIYIDQEK EGLAPTISEK EEIGIDGTNQ SENGSRGRKN HERHYAIFEE GRATKQLALD  300
NEDYELSDLL ERLLLSNKNG GLLSLECKSE KSIETKDLHG PNGTWDHSKK KEYKSTSDLR  360
SLLTLCAQAV STYDFKTARE LLRQIRQDSS PTGDGSQRIA HYFADGLEAR LAGSIGSSQA  420
FHYSVIEKRS LADKVRAYQL HYSTCPFTRF QILFSNYVIL KSAETAKVLH IVDFGINFGF  480
QWPILIQELS KRTGGVTKLR ITGIELPQSG FRPAERIEGT GHRLAKYCKR FHTFEFQAVA  540
SASWECIRVA DLKIQKGEVV AVNCLSRFEY LYDETVEVNC QRDMVLSLIK SMKPHVFVHG  600
IRNGSYNAPF FITRFREALF HLSTMYDMFN TTVDRANAQR LVLERDFFGR EIMNIVACEG  660
LERVERPETY KQWQVRLNRV GFQQLPLDQE LIKKARAKLS GDYHKDFMLD EENNWILLSW  720
RGGIISGCTC WVSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-41	355	687	1	328	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043523.2	0.0	PREDICTED: scarecrow-like protein 34 isoform X2
TrEMBL	A0A059D4Y1	0.0	A0A059D4Y1_EUCGR; Uncharacterized protein
STRING	XP_010043523.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	1e-156	GRAS family protein