![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC033125.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 792aa MW: 89580.5 Da PI: 4.8607 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 363.8 | 2.5e-111 | 415 | 786 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL+ cA+avs++d++ a +L+++++ +sp+gd qRla+yf+++L++rla+s ++ ++ +s + +++l+a++l v+P++kf+ + EcC033125.10 415 LRSLLVLCAQAVSASDFRTAPGILKQIRHDSSPSGDGSQRLAHYFANGLETRLAGSIDTNQAQRFCSYRT---IADKLKAYHLHLSVCPFMKFQIIF 508 6899***************************************************666655555555554...9*********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N +Il+ +++++ +HiiDf+i+ G+QWp L+q+L++R+egpp+lRiTg++ p++g +e++eetg rLa+++e+++vpfef+++++ ++e++++e EcC033125.10 509 SNFMILKFAATAKVLHIIDFGINFGFQWPILIQELSKRTEGPPKLRITGIELPQPGfrPAEKIEETGCRLANYCERFNVPFEFQAVASGSWECIRIE 605 *******************************************************9*****************************8888******** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +L+++++E+++Vn+ +l++l+de+v+ + +rd+vL+l++s++P+v+v+ + ++n++ Fl+rf eal + sa+fd+l+a+++r++e+r ++E+e+ EcC033125.10 606 DLKIRSDETVIVNCLCRLEYLYDETVEENCQRDAVLRLIRSIEPDVFVHGIYNGSYNTPFFLNRFREALFHISAVFDMLDATVARDNEQRLVLEKEF 702 ************************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 g ei+ v aceg +r+ r et+++W+ rl++aGFk++pl+++ +k+a++ l++ + + + ++e+s++++lgW++r + + +W EcC033125.10 703 YGLEIMIVCACEGLHRIYRAETYRQWQVRLNRAGFKQLPLDHELMKKARAKLSERYHEDFGLDEQSNWMMLGWMGRMISASACW 786 ********************************************************899*********************9999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.297 | 389 | 767 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.7E-109 | 415 | 786 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 792 aa Download sequence Send to blast |
MTMESKFTEL TNPVNGFEAD SLAYPANPDP FPCLSDGFNV DELYVDFNSS EISSLPHEQQ 60 SANDKSIVQI ILDGGLNLPS TEVSPDGGSL HNSTSFSEIP NLRGESLSLL DYSDSTDPVL 120 KYITQILMEE DVEEQPWIIP DFSALRQTEK SLYDTLGKKY PNSPEQTIEV NTNQFIDGTS 180 SNCNEDSSEQ GCTGTSHSLD PNSQDDPEGS LYHASLYAPN PHELVMQWTM DPSSHFYINS 240 TSSFPDYWNG FGDAFPSELL HRSTLSNSQP GLQLQSNKQF EEARKFLPVS VPVTMDQENY 300 DLAHKIGNTE VNGVDDEENL RNRLKNASRA RKNHHGDDAT FDEGRANKQS ALYKEDKEDC 360 ELSEMLDKVL LGDNMGGGPL FLESTSEKKS GKEDLPGPTC GRGRHKKRTK STVDLRSLLV 420 LCAQAVSASD FRTAPGILKQ IRHDSSPSGD GSQRLAHYFA NGLETRLAGS IDTNQAQRFC 480 SYRTIADKLK AYHLHLSVCP FMKFQIIFSN FMILKFAATA KVLHIIDFGI NFGFQWPILI 540 QELSKRTEGP PKLRITGIEL PQPGFRPAEK IEETGCRLAN YCERFNVPFE FQAVASGSWE 600 CIRIEDLKIR SDETVIVNCL CRLEYLYDET VEENCQRDAV LRLIRSIEPD VFVHGIYNGS 660 YNTPFFLNRF REALFHISAV FDMLDATVAR DNEQRLVLEK EFYGLEIMIV CACEGLHRIY 720 RAETYRQWQV RLNRAGFKQL PLDHELMKKA RAKLSERYHE DFGLDEQSNW MMLGWMGRMI 780 SASACWCPHR LG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-43 | 415 | 744 | 5 | 330 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043525.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_010043526.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_010043527.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
TrEMBL | A0A059D560 | 0.0 | A0A059D560_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043524.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |