PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC033124.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 792aa MW: 89588.5 Da PI: 4.8607

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC033124.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	368	1.3e-112	415	786	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL+ cA+avs++d++ a +L+++++ +sp+gd qRla+yf+++L++rla+s ++ ++ +s + +++l+a++l v+P++kf+ + EcC033124.20 415 LRSLLVLCAQAVSASDFRTAPGILKQIRHDSSPSGDGSQRLAHYFANGLETRLAGSIDTNQAQRFCSYRT---IADKLKAYHLHLSVCPFMKFQIIF 508 6899*************************************************666655555555554...9******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N +Il+ +++++ +HiiDf+i+ G+QWp L+q+L++R+egpp+lRiTg++ p++g +e++eetg rLa+++e+++vpfef+++++ ++e++++e EcC033124.20 509 SNFMILKFAATAKVLHIIDFGINFGFQWPILIQELSKRTEGPPKLRITGIELPQPGfrPAEKIEETGCRLANYCERFNVPFEFQAVASGSWECIRIE 605 ***************************************************9*************************8888**** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +L+++++E+++Vn+ +l++l+de+v+ + +rd+vL+l++s++P+v+v+ + ++n++ Fl+rf eal + sa+fd+l+a+++r++e+r ++E+e+ EcC033124.20 606 DLKIRSDETVVVNCLCRLEYLYDETVEENCQRDAVLRLIRSIEPDVFVHGIYNGSYNTPFFLNRFREALFHISAVFDMLDATVARDNEQRLVLEKEF 702 ********************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 g ei+ vvaceg +r+ r et+++W+ rl++aGFk++pl+++ +k+a++ l++ + + + ++e+s++++lgW++r + + +W EcC033124.20 703 YGLEIMIVVACEGLHRIYRPETYRQWQVRLNRAGFKQLPLDHELMKKARAKLSERYHEDFGLDEQSNWMMLGWMGRMISASACW 786 ****************************************************899*******************9999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.153	389	767	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.4E-110	415	786	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 792 aa Download sequence Send to blast
MTMESKFTEL TNPVNGFEAD SLAYPANPDP FPCLSDGFNV DELYVDFNSS EISSLPHEQQ 60 SANDKSIVQI ILDGGLNLPS TEVSPDGGSL HNSTSFSEIP NLRGESLSLL DYSDSTDPVL 120 KYITQILMEE DVEEQPWIIP DFSALRQTEK SLYDTLGKKY PNSPEQTIEV NTNQFIDGTS 180 SNCNEDSSEQ GCTGTSHSLD PNSQDDPEGS LYHASLYAPN PHELVMQWTM DPSSHFYINS 240 TSSFPDYWNG FGDAFPSELL HRSTLSNSQP GLQLQSNKQF EEARKFLPVS VPVTMDQENY 300 DLAHKIGNTE VNGVDDEENL RNRLKNASRA RKNHHGDDAT FDEGRANKQS ALYKEDKEDC 360 ELSEMLDKVL LGDNMGGGPL FLESTSEKKS GKEDLPGPTC GRGRHKKRTK STVDLRSLLV 420 LCAQAVSASD FRTAPGILKQ IRHDSSPSGD GSQRLAHYFA NGLETRLAGS IDTNQAQRFC 480 SYRTIADKLK AYHLHLSVCP FMKFQIIFSN FMILKFAATA KVLHIIDFGI NFGFQWPILI 540 QELSKRTEGP PKLRITGIEL PQPGFRPAEK IEETGCRLAN YCERFNVPFE FQAVASGSWE 600 CIRIEDLKIR SDETVVVNCL CRLEYLYDET VEENCQRDAV LRLIRSIEPD VFVHGIYNGS 660 YNTPFFLNRF REALFHISAV FDMLDATVAR DNEQRLVLEK EFYGLEIMIV VACEGLHRIY 720 RPETYRQWQV RLNRAGFKQL PLDHELMKKA RAKLSERYHE DFGLDEQSNW MMLGWMGRMI 780 SASACWCPHR LG

Sequence ? help Back to Top

Protein Sequence Length: 792 aa Download sequence Send to blast

MTMESKFTEL TNPVNGFEAD SLAYPANPDP FPCLSDGFNV DELYVDFNSS EISSLPHEQQ  60
SANDKSIVQI ILDGGLNLPS TEVSPDGGSL HNSTSFSEIP NLRGESLSLL DYSDSTDPVL  120
KYITQILMEE DVEEQPWIIP DFSALRQTEK SLYDTLGKKY PNSPEQTIEV NTNQFIDGTS  180
SNCNEDSSEQ GCTGTSHSLD PNSQDDPEGS LYHASLYAPN PHELVMQWTM DPSSHFYINS  240
TSSFPDYWNG FGDAFPSELL HRSTLSNSQP GLQLQSNKQF EEARKFLPVS VPVTMDQENY  300
DLAHKIGNTE VNGVDDEENL RNRLKNASRA RKNHHGDDAT FDEGRANKQS ALYKEDKEDC  360
ELSEMLDKVL LGDNMGGGPL FLESTSEKKS GKEDLPGPTC GRGRHKKRTK STVDLRSLLV  420
LCAQAVSASD FRTAPGILKQ IRHDSSPSGD GSQRLAHYFA NGLETRLAGS IDTNQAQRFC  480
SYRTIADKLK AYHLHLSVCP FMKFQIIFSN FMILKFAATA KVLHIIDFGI NFGFQWPILI  540
QELSKRTEGP PKLRITGIEL PQPGFRPAEK IEETGCRLAN YCERFNVPFE FQAVASGSWE  600
CIRIEDLKIR SDETVVVNCL CRLEYLYDET VEENCQRDAV LRLIRSIEPD VFVHGIYNGS  660
YNTPFFLNRF REALFHISAV FDMLDATVAR DNEQRLVLEK EFYGLEIMIV VACEGLHRIY  720
RPETYRQWQV RLNRAGFKQL PLDHELMKKA RAKLSERYHE DFGLDEQSNW MMLGWMGRMI  780
SASACWCPHR LG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-43	415	744	5	330	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043525.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_010043526.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_010043527.1	0.0	PREDICTED: scarecrow-like protein 34
TrEMBL	A0A059D560	0.0	A0A059D560_EUCGR; Uncharacterized protein
STRING	XP_010043524.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM34366	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14