PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033111.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 163aa    MW: 18580.8 Da    PI: 4.6771
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033111.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.61.2e-112092276
      trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76
                  W+    l L++    +e +  ++ +  ++We +++++    + r+++qC+ kwe+l  +y+++k+ e++  s+  
  EcC033111.10 20 WSAGNLLILVNEIAAVEGDCLNALSSYQKWEIIAENCTVLDVDRTSNQCRRKWESLLAEYRRVKQYESR--SGIN 92
                  777777788888888888888888999**************************************9997..3444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-102095No hitNo description
PROSITE profilePS500906.7482076IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.6E-44776IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MKQEMGSGPR RTRSQAAPDW SAGNLLILVN EIAAVEGDCL NALSSYQKWE IIAENCTVLD  60
VDRTSNQCRR KWESLLAEYR RVKQYESRSG INSYWSLGRD RKKVLGLPET FDRELFEAIN  120
NLLMAREDRA DTEPDSDPEA EGDTLEAAVC KSGNFCFCFL RNF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041686.11e-116PREDICTED: trihelix transcription factor ASR3
TrEMBLA0A058ZRW21e-115A0A058ZRW2_EUCGR; Uncharacterized protein
STRINGXP_010041686.11e-115(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121542328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-55sequence-specific DNA binding transcription factors