PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032821.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-X1
Protein Properties Length: 1065aa    MW: 116509 Da    PI: 7.8615
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032821.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.91.6e-06301318118
      zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                   CG+H C+++CH GpC+pC
  EcC032821.20 301 CGRHWCEETCHVGPCDPC 318
                   ****************** PP
2zf-NF-X118.35.2e-06365382118
      zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                   CG+HkC ++CH+GpC++C
  EcC032821.20 365 CGNHKCHEICHPGPCGEC 382
                   ****************** PP
3zf-NF-X122.52.4e-07423440118
      zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                   CG+H+C+ +CH G+C pC
  EcC032821.20 423 CGIHRCKDKCHAGDCAPC 440
                   ****************** PP
4zf-NF-X119.81.7e-06511530120
      zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                   CG+H+C+ lCH G CppC +
  EcC032821.20 511 CGQHSCEVLCHSGHCPPCLR 530
                   ******************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.18E-5125195No hitNo description
PROSITE patternPS013590135189IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.022135190IPR001841Zinc finger, RING-type
CDDcd060081.24E-5223284No hitNo description
SMARTSM004380.023246264IPR000967Zinc finger, NF-X1-type
PfamPF014227.9248263IPR000967Zinc finger, NF-X1-type
CDDcd060089.46E-11291339No hitNo description
SMARTSM004380.0051301320IPR000967Zinc finger, NF-X1-type
PfamPF014221.3E-4301318IPR000967Zinc finger, NF-X1-type
CDDcd060084.20E-9355397No hitNo description
SMARTSM004380.0025365384IPR000967Zinc finger, NF-X1-type
PfamPF014220.0016365382IPR000967Zinc finger, NF-X1-type
CDDcd060085.37E-14413461No hitNo description
SMARTSM004381.2E-4423442IPR000967Zinc finger, NF-X1-type
PfamPF014221.1E-5423440IPR000967Zinc finger, NF-X1-type
CDDcd060081.48E-5469522No hitNo description
SMARTSM0043833479503IPR000967Zinc finger, NF-X1-type
PfamPF014224.3479490IPR000967Zinc finger, NF-X1-type
CDDcd060081.07E-7501544No hitNo description
SMARTSM004383.9E-4511530IPR000967Zinc finger, NF-X1-type
PfamPF014229.4E-5511528IPR000967Zinc finger, NF-X1-type
SMARTSM004380.11568586IPR000967Zinc finger, NF-X1-type
PfamPF0142291568584IPR000967Zinc finger, NF-X1-type
SMARTSM004384.9622652IPR000967Zinc finger, NF-X1-type
PfamPF014220.02622637IPR000967Zinc finger, NF-X1-type
PfamPF014221.5654681IPR000967Zinc finger, NF-X1-type
SMARTSM004380.032661682IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3309.2E-4896942IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004356Molecular Functionglutamate-ammonia ligase activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1065 aa     Download sequence    Send to blast
MSFQIQENRR GSRRFPSRVA PQEWARSGRS PSAATLNSSS SLVSNPSIDS VSSDRPGWLR  60
GSTSKLSGSN GETTSTSGQG ASYGSKFHRS RVTGQRKERG NERTVMDERK GSKDENLPQL  120
AQEIQEKLMK GTVECMICCD MIRRTAPIWS CPCCYSIFHL NCVRKWARAP TSSDLSVENC  180
GVNWRCPGCQ KVQLMSSNEI KYLCFCGKRT DPPSDFYLIP HSCGESCGKP LQSRASRVDE  240
AEEDLCPHVC VLQCHPGPCP PCKAFAPPQP CPCGKETITA RCSDRKSFLT CGQKCDKLLE  300
CGRHWCEETC HVGPCDPCHA LLDASCFCKR KVEVVPCGDM DLKGELEAEQ GVFSCGSTCG  360
EELGCGNHKC HEICHPGPCG ECELLPSRIK TCYCGKTNLP EERRSCLEPI PTCSETCDKP  420
LRCGIHRCKD KCHAGDCAPC LVPVIQRCRC GSTSRTVPCH KMMDEIFTCE KPCSRKKNCG  480
RHRCSDRCCP QSSSDTNQHF CTLVCDKKLR CGQHSCEVLC HSGHCPPCLR SIFTDLSCAC  540
GRTSIPPPLP CGTPPPSCPH TCSVVQPCGH ATSHSCHFGD CRPCLVPVVK ECIGGHVVLR  600
NIPCGSTNNI TCNNLCGKTR RCGLHACGRT CHPAPCDVDT PDEAHHKASC GQVCGAPRRA  660
CRHTCKAPCH PSSPCPDVRC KFVVTIMCSC ARIKANVPCD AGGSDDNHVG EASLIQKLPP  720
LQHLEASSGR VPLGQRKLMC DDECARLERK RVLADAFNIV SPNLDALRLK ENFELVADLF  780
RRDPKWVLSV EDRCKFLLYG KSMGSTASLK VHVFRPMHKE KREALRLIAQ RWKLTIHEVG  840
REQRCFTVIC VTPKSKAPAR VLGVKGPMNA NALNPPTFDP LVDMDPRYVV SFFDLPRESD  900
ISALVLRFGG ECELLWLNDK NAMAVFSDMT RAATAMRTLD HGSVYYGAVT FLRNGGSSAQ  960
SFATNAWRGP ASANMGSSSW KKVVVQEPGA ANDSWYDDEG WSVASATIKG KEAPSSASAT  1020
TQNISNAGSQ MELIGASDLE GQHDVASHDT NDMVDVVDDW ETAFA
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036984.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
RefseqXP_018720962.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A059A3D60.0A0A059A3D6_EUCGR; Uncharacterized protein
STRINGXP_010036984.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1