PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032499.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 308aa    MW: 34682.6 Da    PI: 7.3251
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032499.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.1e-182774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde+l+ +vk+ G g+W+t +++ g+ R++k+c++rw +yl
     EcC032499.10 27 RGPWTPEEDEILASYVKKEGEGRWRTLPKRAGLMRCGKSCRLRWMNYL 74
                     89********************************************97 PP
2Myb_DNA-binding47.15.6e-1585125648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
     EcC032499.10  85 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 125
                      89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-231876IPR009057Homeodomain-like
PROSITE profilePS5129417.5382274IPR017930Myb domain
SuperFamilySSF466892.35E-2924121IPR009057Homeodomain-like
SMARTSM007178.8E-132676IPR001005SANT/Myb domain
PfamPF002494.1E-162774IPR001005SANT/Myb domain
CDDcd001672.90E-112974No hitNo description
PROSITE profilePS5129424.39775129IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2477130IPR009057Homeodomain-like
SMARTSM007172.7E-1379127IPR001005SANT/Myb domain
PfamPF002499.4E-1485125IPR001005SANT/Myb domain
CDDcd001672.54E-1185125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0010181Molecular FunctionFMN binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MRNPSSSSSS NSPSKPTPCC SKVGIKRGPW TPEEDEILAS YVKKEGEGRW RTLPKRAGLM  60
RCGKSCRLRW MNYLRPSVKR GQIAPDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNEIKNY  120
WNTHLSKKLI SQGIDPRTHK PLELIPNMPT SDDYDFAPAS ISPQNPTASE FQVTNGDHYQ  180
VAITDNTQDP KDVMTNLQDL HQNPRVDHQG GVNQNWQSLD GSTIRAGSSS HHGEAQTHAQ  240
FYMDNSNEDV FSSFLDSLIN EDGYTNQHQR ATSFLPMVSP TFNNQGAIWE AELRAAMGPS  300
ADQQKWNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25271297108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036229.10.0PREDICTED: transcription repressor MYB6
TrEMBLA0A059A2370.0A0A059A237_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010036229.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-76myb domain protein 5