PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032247.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 552aa    MW: 62037.5 Da    PI: 9.8758
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032247.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.98e-18177261191
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+l++s+v++  ++ lp  f+++h  +  +++t++lede g+++e+k+i  k++    l++GW++F   ++L egD++vF+l++ ++f+
  EcC032247.10 177 FIKALVRSHVGSCFWMGLPGVFCRAHLPN--KDTTIVLEDEYGKQYEMKYIAHKTG----LSAGWRQFSVGHNLLEGDVLVFQLVEPNKFK 261
                   89************************634..6789***************655555....***********************99876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-18169261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-21172263IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-23175261No hitNo description
PROSITE profilePS5086312.449177269IPR003340B3 DNA binding domain
SMARTSM010197.5E-22177269IPR003340B3 DNA binding domain
PfamPF023623.7E-15177261IPR003340B3 DNA binding domain
PfamPF052662.7E-8426537IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MAAGQVKTEM QDEGPQATAP APAPEELRNL KLPAEGGVTL ALLSPTSASR AKADAGSSSM  60
VLPPSLSAEM KGENECSLFW VVVLVRVRRR KGTILKIKMK DSGSQVGFVL PRRMLCVSGP  120
AYNIWLEVVS DRSRKSLSFK KSKTALDGTL DPGEVKSGAM VRAEEVQSNL EPTYPSFIKA  180
LVRSHVGSCF WMGLPGVFCR AHLPNKDTTI VLEDEYGKQY EMKYIAHKTG LSAGWRQFSV  240
GHNLLEGDVL VFQLVEPNKF KKLTLVGKSS SYPVLEDTLL KKSYTWNLRK MASTSVGHED  300
GTDHEASARQ PRRRRGSSLP LAIVQKRRKK SDQQKSTPNP ECLVEQSEND SEGVNSEVLE  360
GFKLSLPDVQ FKDVDSFSTF HIVIDGMVVN SELSEDILRK YYELCRSQNV FLHENLLKGM  420
NYKLIVGIIC ETVHVADAVR ACKITTTREE FETWDKTLKA FKILGMNVGF VRARLKQLVG  480
LAFESEMAME TQKYVESKRN RDCADEEISN LEARLLELKE DNRRVKKKKK TLESQLAVNR  540
FLRKKRRPRT RT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1521528NRRVKKKK
2527546KKKTLESQLAVNRFLRKKRR
3541547LRKKRRP
4542548RKKRRPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070338.10.0PREDICTED: B3 domain-containing protein Os01g0234100
TrEMBLA0A059AZ520.0A0A059AZ52_EUCGR; Uncharacterized protein
STRINGXP_010070338.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM168371012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-31B3 family protein