PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032073.80
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 702aa    MW: 80542.4 Da    PI: 6.8779
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032073.80genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.45.3e-1103317002374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   + lL++cA+av+s+d++ ++alL++++++asp g+ +qRla+yf+++L+arla+++s++y+ l  ++t+    ++ l+a++l+  ++P+ + s+++ 
  EcC032073.80 331 RMLLIRCAQAVASNDHRSTNALLNEIRKHASPFGNGTQRLAHYFANGLEARLAGTGSQIYRGLINRKTT---AADMLNAYHLYLAACPFQRYSNVVS 424
                   569************************************************************999998...9************************ PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                      Il+ v+ e r+HiiDf+i +G+ Wp+L+q L++Rp + p+lRiTg++ p++g   +e+++etg+rLa++Ae+++vpfe+n+ +akr+e +elee
  EcC032073.80 425 ITSILDTVADEMRIHIIDFGILYGFRWPTLIQRLSQRPCP-PKLRITGIDLPQPGfrPAERVKETGQRLANYAESFNVPFEYNA-IAKRWEFIELEE 519
                   *************************************876.9************9*****************************.7*********** PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                   L+++++E+++Vn++++ ++l+de+ + es+rd vL+l+++ +P+++++   + ++n++ F++rf eal+++s+lfd+l++ +p+++eer+ +E++ l
  EcC032073.80 520 LKIDRDEVTIVNCMFRFENLFDETIAEESPRDIVLNLIRRAQPDLFIHGVINGNYNAPFFVTRFREALHHFSSLFDMLDNIIPHQNEERMLIEKVTL 616
                   ************************************************************************************************* PP

          GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   gre+ n +aceg er+er e++++W+ r ++aGF +vpls + a+ +   ++  + + + v+e  ++l++gWk+r L+++S W+
  EcC032073.80 617 GREALNTIACEGWERVERPESYKQWQLRNMRAGFVQVPLSRRLAQFVFNQMALRYHKDFVVDEVGKWLLIGWKGRFLYAFSTWK 700
                   *****************************************99988877777777677*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.976304680IPR005202Transcription factor GRAS
PfamPF035141.8E-107331700IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046274Biological Processlignin catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0048046Cellular Componentapoplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005507Molecular Functioncopper ion binding
GO:0016787Molecular Functionhydrolase activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0052716Molecular Functionhydroquinone:oxygen oxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MDPLMGALYP SDEFPSDDQS ISAVVDRCLV SRPTFQSAPD RCGEMHHLVD VAPFSNDCRD  60
APDTEETEFS DAVFKYISRI LMEEDIEEKA CMLQDSLDLL SAEKSFYEVL GQKYPPSPEP  120
SRTNCITYNE KHSNDSLLDS TRCTSTVSSR KTGHYANVRQ VENPSNYCTM SFEKDISPSA  180
FKPNRGGNAQ RLDLCGENQF VRQFRMGVED SSKFLPNQAT TELLHQEPHG KIDKVDRLGA  240
WKRKESLHRE EGNMEERSTK QAFVHEESIL RSDAFDAVLL NSQGEGLAHL MNLRASLKHR  300
ENEIAHKIEE LKGGRGRGKK KRGKVEVVDV RMLLIRCAQA VASNDHRSTN ALLNEIRKHA  360
SPFGNGTQRL AHYFANGLEA RLAGTGSQIY RGLINRKTTA ADMLNAYHLY LAACPFQRYS  420
NVVSITSILD TVADEMRIHI IDFGILYGFR WPTLIQRLSQ RPCPPKLRIT GIDLPQPGFR  480
PAERVKETGQ RLANYAESFN VPFEYNAIAK RWEFIELEEL KIDRDEVTIV NCMFRFENLF  540
DETIAEESPR DIVLNLIRRA QPDLFIHGVI NGNYNAPFFV TRFREALHHF SSLFDMLDNI  600
IPHQNEERML IEKVTLGREA LNTIACEGWE RVERPESYKQ WQLRNMRAGF VQVPLSRRLA  660
QFVFNQMALR YHKDFVVDEV GKWLLIGWKG RFLYAFSTWK PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4333670124379Protein SCARECROW
5b3h_D2e-4333670124379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039203.20.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A059A7780.0A0A059A778_EUCGR; Uncharacterized protein
STRINGXP_010039203.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein