PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC031813.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YC
Protein Properties Length: 581aa    MW: 63643.7 Da    PI: 4.8007
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC031813.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC574.4e-186861898
         NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                  ++++P arikki++adedv +i+  +P l+ska elf+ +l  r++  + +   +tl+   ++++v+  ++fdfl +iv +
  EcC031813.50  6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLKRGAKTLNSFHLKQCVQTFNVFDFLSEIVSK 86
                  5789************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-25372IPR009072Histone-fold
SuperFamilySSF471136.92E-19488IPR009072Histone-fold
PfamPF008082.4E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF484032.18E-12287387IPR020683Ankyrin repeat-containing domain
CDDcd002041.58E-12290387No hitNo description
PfamPF127963.6E-8312378IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.9317387IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.763317340IPR002110Ankyrin repeat
SMARTSM002480.033317346IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.206.8E-12319402IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.766351378IPR002110Ankyrin repeat
SMARTSM002480.0017351380IPR002110Ankyrin repeat
PfamPF139623.9E-9424526IPR026961PGG domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004869Molecular Functioncysteine-type endopeptidase inhibitor activity
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YDITLKRGAK  60
TLNSFHLKQC VQTFNVFDFL SEIVSKVPDL GGSDAAGDDR SAAKRRKMVD DGENDTDDES  120
KRSRVNDTGH TGSAGRGKGR GRGRGRGRGG RASEGDATVQ NEKFEVDGDV PQQDNLNQNL  180
EGTENGDHLN ESKDSIPTPR SAEPPVRNFD LNVDLDENGD SKSILASGPT SISAAPDAGF  240
KHEEYPGWSL SEVEKMAIDP IQLANLNRGM DEDDEDYDEE GMDPRLSRVI QYEDVTSLRA  300
LLAEDPLILD KALLGPTAET PLHLAVLAGN SELVKEIVSR KPNFARELNH DGLTPLHIVS  360
ATGNLEVARE LLTVGPDLCS DQLDGQTKAE PQANRNKKAV TKADSTQQSS QSTDDDSSSG  420
IWSEVEEMVL VVASLLATIT YQAGLSPPET IRSDSMKQDT RCTSHHSFFS STDLCPVAAY  480
YLFMSFNTSG FFSSIFLIFF FRKPSYVQVL LPVALLSMVV TYMTLSVTLS PNGLSLLLIY  540
VITLAIFLYC MFAVQVVKTI FRNAFSFAAG KISNVTKAMK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-20272575Transcription Regulator NC2 alpha chain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139148RGRGRGRGRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.18e-55nuclear factor Y, subunit C11