PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC031797.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | AP2 | ||||||||
Protein Properties | Length: 578aa MW: 63441.8 Da PI: 7.9666 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.3 | 3.9e-13 | 245 | 301 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++t+e+Aa+a++ a++k++g EcC031797.20 245 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDTEEKAARAYDLAALKYWG 301 78*******************87776664446655.77******************98 PP | |||||||
2 | AP2 | 48.4 | 2.3e-15 | 344 | 395 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I ++ +k +lg+f t eeAa+a++ a+ k++g EcC031797.20 344 SIYRGVTRHHQHGRWQARIGRVTG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 395 57****************999644...4************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.95E-15 | 245 | 310 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.10E-19 | 245 | 308 | No hit | No description |
Pfam | PF00847 | 4.6E-10 | 245 | 301 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-22 | 246 | 315 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-13 | 246 | 309 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.728 | 246 | 309 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 247 | 258 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.44E-24 | 344 | 405 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-18 | 344 | 405 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-9 | 344 | 395 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-34 | 345 | 409 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-18 | 345 | 404 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 345 | 403 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 385 | 405 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MDVPSSQPHH HHPYCHQTQF PSVTTDSGSV PLSLSYEVGE VTNAGFFHSP LCVMPVKSDG 60 SLCLMEDLTR SQTQGAFSFS LSTKCDSASP PRLAHSFSFI VLGKCSSFYG NLWSSGMMPS 120 SAPKLEDFLG VHYSGRQDGE AQLGYSELVY RASMEEETNG MSRLGNVVNV DDCTVSGSVS 180 VHGKESGGFY SQIQSGCVAL TAPRQFSPAI NTESLAIETR KRALEVDRKL PVPRKSIDTF 240 GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQSRKGRQG GYDTEEKAAR AYDLAALKYW 300 GPSTHINFSL ENYRKELEEM KTMSRLEYIA HLRRRSSGFS RGASIYRGVT RHHQHGRWQA 360 RIGRVTGNKD LYLGTFTTQE EAAEAYDIAA IKFRGVNAVT NFDVSRYDVE KIMTSNTLLA 420 GELVRRNKEA APRYDMGYLT SGEAPESIDG NGLGWKIVLH ESPQGQPNDV AKSLDQKSIA 480 RSDQISSLSM ALQHISDEGN RGRASFADPS SAVTGLGNSQ DGAPDRTCSN TLLGKPVSVP 540 EFSNAPPGCI SSWLHSTRLI SAPISGSRSP VFTALSEI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059818.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q38914 | 1e-129 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A059BKN4 | 0.0 | A0A059BKN4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059818.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3137 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-117 | AP2 family protein |