PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC031687.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 178aa    MW: 20430.2 Da    PI: 7.0945
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC031687.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.31e-1168175298
                   EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE- CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkld 85 
                   +k+lt+sdv+ ++rl + ++f+++h           + ++ ++ ++++ d  +g + ++ +  + + g+yvl++GW keFvk  gL +gD v  + d
  EcC031687.20  68 EKTLTQSDVGHLSRLLIGRDFVKSHflrwiskervrQVESGKQAKVIVWDeDTGSEHQLVFVLWAS-GSYVLKRGWiKEFVKRRGLAVGDEVGMYWD 163
                   79***************************9999988444445667777773556777777765877.59*******899***********9999954 PP

                   SSSEE..EEEEE- CS
            B3  86 grsefelvvkvfr 98 
                      + +++++++r
  EcC031687.20 164 P-FTSKFHFSLLR 175
                   2.33334777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-1466175IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-667177IPR003340B3 DNA binding domain
CDDcd100174.35E-1867175No hitNo description
Gene3DG3DSA:2.40.330.101.2E-1567176IPR015300DNA-binding pseudobarrel domain
PfamPF023626.4E-968175IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
ENNHDEEARV VSSAGAVVAR EFFPLVPDLN TKEVGDPRQE ILPAQPRANY AEEVSTELTL  60
LFDPYKIEKT LTQSDVGHLS RLLIGRDFVK SHFLRWISKE RVRQVESGKQ AKVIVWDEDT  120
GSEHQLVFVL WASGSYVLKR GWIKEFVKRR GLAVGDEVGM YWDPFTSKFH FSLLRKAN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058727.11e-127PREDICTED: B3 domain-containing protein At2g33720
TrEMBLA0A059C5T83e-85A0A059C5T8_EUCGR; Uncharacterized protein
STRINGXP_010058727.11e-127(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.11e-29B3 family protein