PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC031301.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 122aa MW: 13388.1 Da PI: 4.7107 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 54.8 | 2.8e-17 | 2 | 53 | 49 | 100 |
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lp +r da+sslvyeA ar+rdPvyG+vg i+ lq+q++ql+++la++++e EcC031301.10 2 LPVCQRADAVSSLVYEASARVRDPVYGCVGAISYLQNQVSQLQTQLAVAQAE 53 57789*******************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.355 | 1 | 54 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-15 | 2 | 51 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
ELPVCQRADA VSSLVYEASA RVRDPVYGCV GAISYLQNQV SQLQTQLAVA QAEIMCFQMQ 60 QDSAVMQLPR MMDVPDDDRS SSPFLLPNNL THFLNLSPAS SGNVTHDHSL KRESILGHDV 120 VS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-17 | 1 | 55 | 58 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-17 | 1 | 55 | 58 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010031173.1 | 3e-83 | PREDICTED: LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 3e-30 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A059A9Y5 | 6e-82 | A0A059A9Y5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010031173.1 | 1e-82 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-32 | LBD family protein |
Publications ? help Back to Top | |||
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