PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC031144.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 141aa MW: 15597.8 Da PI: 8.4989 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 130.4 | 2e-40 | 1 | 141 | 232 | 374 |
GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328 k+l P+vv +veqe++ n+++F +r+ eal yy al++s+e+++ r+++er+ E+ l+r++ n vac+g++r+er+e +e+Wr+r+++aGF+ p EcC031144.20 1 KGLAPRVVALVEQEMNGNTAPFPTRVGEALAYYGALLESIESTVLRDDSERARAEEG-LSRRLGNSVACKGRDRVERCEVFEEWRARMGMAGFELKP 96 689******************************************************.*************************************** PP GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l++++ + + l++ v+ g++ +ee+ +++gW++r+L+++SaWr EcC031144.20 97 LGQRMGQGVAQLMNLVN-PGHTGKEENVGFCFGWRGRTLIVASAWR 141 ****************9.99*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.389 | 1 | 122 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.8E-38 | 1 | 141 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
KGLAPRVVAL VEQEMNGNTA PFPTRVGEAL AYYGALLESI ESTVLRDDSE RARAEEGLSR 60 RLGNSVACKG RDRVERCEVF EEWRARMGMA GFELKPLGQR MGQGVAQLMN LVNPGHTGKE 120 ENVGFCFGWR GRTLIVASAW R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-13 | 3 | 140 | 241 | 378 | Protein SCARECROW |
5b3h_A | 1e-13 | 3 | 140 | 240 | 377 | Protein SCARECROW |
5b3h_D | 1e-13 | 3 | 140 | 240 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010060571.1 | 6e-69 | PREDICTED: scarecrow-like protein 8 | ||||
Swissprot | Q9FYR7 | 9e-55 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | A0A059DIP4 | 1e-67 | A0A059DIP4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010060571.1 | 2e-68 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 4e-57 | SCARECROW-like 8 |