PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC030740.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 182aa    MW: 20716.8 Da    PI: 10.0003
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC030740.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.2e-1171165283
                   EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEE CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFk 83 
                   +k lt+sd + ++r+ + ++f+++h           + ++ ++ +++++d +   + ++ + ++ +sg+yvl++GW keFvk  gL +gD v  +
  EcC030740.10  71 KKRLTQSDLSHLSRFLIGRDFVKSHflrwmseetvrQVESGKGADVIVRDMDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAVGDEVGMY 165
                   5889************************98888877555558889999997766778888888*************999***********77665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-1569173IPR015300DNA-binding pseudobarrel domain
CDDcd100178.43E-1770178No hitNo description
Gene3DG3DSA:2.40.330.108.8E-1571176IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-872165IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
NTKEVGDPHQ EIVPAQPKRK SMVSLTNAEA FIAEKKAKSK RTQKGKKEAS GCDPEEVSTE  60
LTLLFDPYKI KKRLTQSDLS HLSRFLIGRD FVKSHFLRWM SEETVRQVES GKGADVIVRD  120
MDTCSEHRLV FVFWASSGSY VLKGGWIKEF VKRRGLAVGD EVGMYWEPIA SKFHFSLLHK  180
AN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058722.21e-116PREDICTED: B3 domain-containing protein At2g33720
TrEMBLA0A059C4Z41e-129A0A059C4Z4_EUCGR; Uncharacterized protein
STRINGXP_010058720.11e-128(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.13e-29B3 family protein