PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC030630.60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | TCP | ||||||||
Protein Properties | Length: 380aa MW: 42191.5 Da PI: 8.0477 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 77.7 | 3.2e-24 | 54 | 121 | 3 | 70 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 g+kdrhsk+ T +g+RdRR+Rlsa+ a +++ Lqd LG+ ++sk i+WL+++a + i +l+ ++ ++ EcC030630.60 54 GGKDRHSKVRTVRGLRDRRIRLSAPAAVQLYYLQDILGLTQPSKVIDWLIEAARHDIEKLPPLQIPQG 121 78***********************************************************9944433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.2E-24 | 55 | 122 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.329 | 55 | 113 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0055085 | Biological Process | transmembrane transport | ||||
GO:0000325 | Cellular Component | plant-type vacuole | ||||
GO:0005774 | Cellular Component | vacuolar membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0042626 | Molecular Function | ATPase activity, coupled to transmembrane movement of substances |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MITSSREKKS AFQAKEVGEK GCSQISKVAP SSSSRWSLEL RNNPRVVRIP RTFGGKDRHS 60 KVRTVRGLRD RRIRLSAPAA VQLYYLQDIL GLTQPSKVID WLIEAARHDI EKLPPLQIPQ 120 GFSEVINQQL LFPPESMNLF DASLPFTKHG LISPSLTLLA GSAKMEVNED CVWSADDRTR 180 LKSKYYWDGI SKLSERSNEF ERGCFSDKSK QIDLNVRENQ EDISSSGTGL VSDQNLLPIG 240 LLNNTIYIPG NYLEPSSHNL SLSPFGSYES ISQRANLPNT IDACVFPSSS KGLNSENQFI 300 LSPSNMTGPS SIPSCSPCWT GAGPIDNEHR KVNHFPLFNS GSQLPSFTPA SLKLYYDALE 360 TKYSLLSRDE SQANDNNGNC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-14 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-14 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010037244.1 | 0.0 | PREDICTED: transcription factor TCP5 isoform X1 | ||||
TrEMBL | A0A059A4B8 | 0.0 | A0A059A4B8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037244.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 5e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |