PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC030630.60
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 380aa    MW: 42191.5 Da    PI: 8.0477
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC030630.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP77.73.2e-2454121370
           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 
                   g+kdrhsk+ T +g+RdRR+Rlsa+ a +++ Lqd LG+ ++sk i+WL+++a + i +l+ ++ ++ 
  EcC030630.60  54 GGKDRHSKVRTVRGLRDRRIRLSAPAAVQLYYLQDILGLTQPSKVIDWLIEAARHDIEKLPPLQIPQG 121
                   78***********************************************************9944433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.2E-2455122IPR005333Transcription factor, TCP
PROSITE profilePS5136925.32955113IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010044Biological Processresponse to aluminum ion
GO:0055085Biological Processtransmembrane transport
GO:0000325Cellular Componentplant-type vacuole
GO:0005774Cellular Componentvacuolar membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0005524Molecular FunctionATP binding
GO:0042626Molecular FunctionATPase activity, coupled to transmembrane movement of substances
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MITSSREKKS AFQAKEVGEK GCSQISKVAP SSSSRWSLEL RNNPRVVRIP RTFGGKDRHS  60
KVRTVRGLRD RRIRLSAPAA VQLYYLQDIL GLTQPSKVID WLIEAARHDI EKLPPLQIPQ  120
GFSEVINQQL LFPPESMNLF DASLPFTKHG LISPSLTLLA GSAKMEVNED CVWSADDRTR  180
LKSKYYWDGI SKLSERSNEF ERGCFSDKSK QIDLNVRENQ EDISSSGTGL VSDQNLLPIG  240
LLNNTIYIPG NYLEPSSHNL SLSPFGSYES ISQRANLPNT IDACVFPSSS KGLNSENQFI  300
LSPSNMTGPS SIPSCSPCWT GAGPIDNEHR KVNHFPLFNS GSQLPSFTPA SLKLYYDALE  360
TKYSLLSRDE SQANDNNGNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1460114155Putative transcription factor PCF6
5zkt_B4e-1460114155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037244.10.0PREDICTED: transcription factor TCP5 isoform X1
TrEMBLA0A059A4B80.0A0A059A4B8_EUCGR; Uncharacterized protein
STRINGXP_010037244.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.15e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5