PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC030464.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 468aa    MW: 52345.8 Da    PI: 5.2839
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC030464.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.28.6e-91604652373
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalkl..fsevsPil 91 
                   ++lL++cA+a++++d++laq++L+ l+++a  dgd++qRl+  f++AL ar a+  s+++k l++ +++++      +++++++ +l  f++++P++
  EcC030464.20  60 EQLLVHCANAIETNDATLAQQILWVLNNIAPADGDSNQRLTCGFLRALIARAAK--SGTCKMLAAMANAQNYdnlcnETHKFSIIELanFVDLTPWH 154
                   79****************************************************..555555533333322234455444444445488******** PP

          GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.... 181
                   +f++ +aN +I eaveg + vHi+D++ ++++Q p+L++a+a+R egpp +++T+ g+ e        ++ee+g++L +fA++ ++++ef+v+    
  EcC030464.20 155 RFGFTAANATIIEAVEGYSVVHIVDLSTTHCMQIPTLIDAIANRLEGPPLVKLTVAGAVEDAppmLDLSYEELGSKLVSFARSRNIHMEFQVIsssy 251
                   ******************************************************9999777787788999**********************98874 PP

          GRAS 182 ...vakrledleleeLrvkp.........gEalaVnlvlqlhrll.................desvsleserdevLklvkslsPkvvvvveqeadhn 249
                       ++ +e+l+++     +          Eal++n++++lh ++                  es s+ s+r+++Lk+++ l P+vv++v+++ad +
  EcC030464.20 252 adgFSSLIEQLRMQ-----KlmysggvgePEALVINCHMMLHFVPdetvplisdseanpnylFESSSVYSPRSTLLKALRCLDPNVVIIVDEDADFT 343
                   44444444555555.....44444477779******************************99888999999************************** PP

          GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                   s++ + r+ +a++y +  +d++++ lpr s++r+++E   + ++i+n++a+eg +r+er e +++W +r+++a F++vp++e+a++++k++l +++ 
  EcC030464.20 344 SNNVASRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYESY-IYWKIQNIIAQEGLQRIERLEPKSRWVQRMRNADFRAVPFGEDAVSEVKAMLDEHA- 438
                   *************************************99.********************************************************. PP

          GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                    g+ +++e++ lvl+Wk++++ ++ aW
  EcC030464.20 439 AGWGLKKEEDDLVLTWKGHNVAFAAAW 465
                   8999*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.06833447IPR005202Transcription factor GRAS
PfamPF035143.0E-8860465IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MMQFTEIPPP QPQTPSFHQS PPPLFSSLPM NKNQVHRTRP WPGFPMPKSL GSLGDANCME  60
QLLVHCANAI ETNDATLAQQ ILWVLNNIAP ADGDSNQRLT CGFLRALIAR AAKSGTCKML  120
AAMANAQNYD NLCNETHKFS IIELANFVDL TPWHRFGFTA ANATIIEAVE GYSVVHIVDL  180
STTHCMQIPT LIDAIANRLE GPPLVKLTVA GAVEDAPPML DLSYEELGSK LVSFARSRNI  240
HMEFQVISSS YADGFSSLIE QLRMQKLMYS GGVGEPEALV INCHMMLHFV PDETVPLISD  300
SEANPNYLFE SSSVYSPRST LLKALRCLDP NVVIIVDEDA DFTSNNVASR LRSAFNYLWI  360
PYDTVDTFLP RGSKQRQWYE SYIYWKIQNI IAQEGLQRIE RLEPKSRWVQ RMRNADFRAV  420
PFGEDAVSEV KAMLDEHAAG WGLKKEEDDL VLTWKGHNVA FAAAWLPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B7e-48124672420Protein SHORT-ROOT
5b3h_E7e-48124672420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070642.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-174SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A059B0Y00.0A0A059B0Y0_EUCGR; Uncharacterized protein
STRINGXP_010070642.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-177GRAS family protein