PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC030451.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 58aa    MW: 6576.64 Da    PI: 9.6192
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC030451.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-07731127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                  +kt+lC  ++r G+C++  +C+FaHg+
  EcC030451.20  7 FKTKLCVLYQR-GHCNR-QSCSFAHGQ 31
                  79*********.*****.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.35E-6336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-11535IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.408632IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031307Cellular Componentintegral component of mitochondrial outer membrane
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 58 aa     Download sequence    Send to blast
MVDRKLFKTK LCVLYQRGHC NRQSCSFAHG QAELRRFVGG PTTGNCDVLP CAFWSSRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035575.12e-26PREDICTED: zinc finger CCCH domain-containing protein 13
TrEMBLA0A059A0054e-25A0A059A005_EUCGR; Uncharacterized protein
STRINGXP_010035575.17e-26(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.15e-10C3H family protein