PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC030342.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 441aa    MW: 49205.1 Da    PI: 4.6568
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC030342.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.32.9e-86454332373
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++lLl+cA a++ +d +laq++++ l++ as++gdp+qRl++ f++AL +r +r +++ ++       +++    +++ l +++++ P+++f++ +a
  EcC030342.30  45 EKLLLHCASALERNDVTLAQQVMWVLNNVASSTGDPNQRLTSWFLKALISRASRLCPTAVNFNGNGIIERRL--MSVTELAVYVDLIPWHRFGYCAA 139
                   689***************************************************777777655333333222..222233459************** PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl........... 181
                   N aI++a++g +rvHi+Df+i++++QWp+L++aLa+Rpegppsl+iT+ +   ++    + + ee+g rL +fA+  +vpfef vl           
  EcC030342.30 140 NGAIYRAIQGYSRVHILDFSITHCMQWPTLIDALAKRPEGPPSLKITVPSCRPPVpplLNVTSEEIGLRLGNFAKFRDVPFEFIVLddspnasesdn 236
                   ***********************************************9777656677999999************************9999888777 PP

          GRAS 182 ...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                       ++ l++l+  +L++  +Eal++n++  + +l de+  ++s     rd +L+++k l P++v++v++++d+ ++s++ r++ +++y +  fd+l
  EcC030342.30 237 pfhFESILSQLSSLDLNLADDEALVINCQNWVRYLCDEPNGVDSqdasLRDIFLDIIKALDPNLVILVDEDVDLCEPSLASRITTCFNYLWIPFDAL 333
                   76545566777777778888*****************99888776666899********************************************** PP

          GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                   e+ lp++s +r  +E   +g +i+n++  eg++r+er e  +k  +r+++aGF ++p++e++++++k+ll +++  g+ ++ e+++lvl+Wk+++ v
  EcC030342.30 334 ETFLPKDSCQRLEYESD-IGHKIENIIGFEGFQRIERLELGSKLVQRMKNAGFLSLPFGEETVSEVKSLLDEHA-SGWGMKREDDTLVLTWKGHNSV 428
                   *****************.********************************************************.8899****************** PP

          GRAS 369 svSaW 373
                   ++++W
  EcC030342.30 429 FATVW 433
                   ***** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.7918415IPR005202Transcription factor GRAS
PfamPF035141.0E-8345433IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0000287Molecular Functionmagnesium ion binding
GO:0005515Molecular Functionprotein binding
GO:0010333Molecular Functionterpene synthase activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MKAELRGNAT TSIYLQNLSL FNTQQSSLSG ALKGCLGSLD AACIEKLLLH CASALERNDV  60
TLAQQVMWVL NNVASSTGDP NQRLTSWFLK ALISRASRLC PTAVNFNGNG IIERRLMSVT  120
ELAVYVDLIP WHRFGYCAAN GAIYRAIQGY SRVHILDFSI THCMQWPTLI DALAKRPEGP  180
PSLKITVPSC RPPVPPLLNV TSEEIGLRLG NFAKFRDVPF EFIVLDDSPN ASESDNPFHF  240
ESILSQLSSL DLNLADDEAL VINCQNWVRY LCDEPNGVDS QDASLRDIFL DIIKALDPNL  300
VILVDEDVDL CEPSLASRIT TCFNYLWIPF DALETFLPKD SCQRLEYESD IGHKIENIIG  360
FEGFQRIERL ELGSKLVQRM KNAGFLSLPF GEETVSEVKS LLDEHASGWG MKREDDTLVL  420
TWKGHNSVFA TVWVPSNGYV N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B7e-533843627421Protein SHORT-ROOT
5b3h_E7e-533843627421Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035620.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A059A0610.0A0A059A061_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010035620.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-127GRAS family protein