PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC029393.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 206aa MW: 21680.5 Da PI: 7.9026 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 101.2 | 1.8e-31 | 47 | 119 | 7 | 66 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............s 66 + ++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg EcC029393.10 47 PARDRHTKVNGRGRRIRIPALCAARIFQLTRELGHRSDGETIEWLLRCAEPSIIAATGYgsmpadpitttvgA 119 5689*******************************************************44444444444440 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 25.035 | 48 | 102 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.7E-26 | 48 | 112 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MGSIISPQDF PSSDQNSPPN LAAAAVEAPP PKPHRQVALS RKSTAAPARD RHTKVNGRGR 60 RIRIPALCAA RIFQLTRELG HRSDGETIEW LLRCAEPSII AATGYGSMPA DPITTTVGAL 120 PPSSTPASAP CPAQPLALAP PAAGHGAFPI SPPPDCRLDL SQPNGFDFSA GGCASNGYRH 180 MPFTALLLQP TATEEAEERQ QREILG |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010046620.1 | 1e-146 | PREDICTED: transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 1e-38 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A059DDZ6 | 1e-145 | A0A059DDZ6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010046620.1 | 1e-146 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37000.1 | 4e-38 | TCP family protein |