PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC029150.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LSD | ||||||||
Protein Properties | Length: 78aa MW: 8506.21 Da PI: 8.2566 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 23.3 | 1.1e-07 | 6 | 30 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ l+sY +G ++V+C +C t+ EcC029150.10 6 CGSCQRLISYQPGTKYVQCLCCKTI 30 **********************997 PP | |||||||
2 | zf-LSD1 | 36.9 | 6.2e-12 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C lL+YP+GAp+V+C+ C V EcC029150.10 44 CGTCAMLLMYPYGAPAVKCSACRSV 68 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.1E-10 | 3 | 33 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-6 | 6 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.5E-10 | 41 | 70 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.1E-10 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0005665 | Cellular Component | DNA-directed RNA polymerase II, core complex | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity | ||||
GO:0032549 | Molecular Function | ribonucleoside binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MAQMVCGSCQ RLISYQPGTK YVQCLCCKTI NFVLEEHQVG QVKCGTCAML LMYPYGAPAV 60 KCSACRSVTE IGVCKLFA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010057425.1 | 1e-45 | PREDICTED: actin cytoskeleton-regulatory complex protein PAN1 | ||||
Swissprot | O65426 | 5e-30 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A059C9I8 | 3e-44 | A0A059C9I8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010057425.1 | 6e-45 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-32 | lsd one like 2 |