PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC028884.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARR-B
Protein Properties Length: 522aa    MW: 57433 Da    PI: 8.0427
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC028884.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like61.81.4e-19207264155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelm....kvkgLtlehvkSHLQkYRl 55 
                   kpr++Wt+eL + Fv av++L G++   Pk+il++m    +v+ Lt+++v SHLQkYR+
  EcC028884.30 207 KPRVVWTSELNRTFVMAVNSL-GNHDVKPKKILQIMrkmtGVPHLTRQNVSSHLQKYRT 264
                   79*******************.88889******99954445899**************8 PP
2Response_reg81.82.1e-27311381107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + ++ll+++l++  y +v+ ++ ge+al +++e++  +D++l+D+ mpgmdG++ll ei++ + +lp++++++ +e++++ + ++ Ga 
  EcC028884.30  31 VLLVDDNVTCLHLLEKMLRDCSY-RVTKCERGEDALSMIRENKgrFDIVLTDVHMPGMDGFRLLAEIAAMGITLPVVMFSSDAEKDTVMKGVNSGAC 126
                   89*********************.***************999999**************************************************** PP

                   EEEESS--HHHH CS
  Response_reg  96 dflsKpfdpeel 107
                    +l+Kp++ + l
  EcC028884.30 127 NYLVKPIQVSTL 138
                   *******98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.55E-3627154IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.0E-4027163No hitNo description
SMARTSM004481.3E-2729142IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.51430146IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2431139IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.10E-2732146No hitNo description
SuperFamilySSF466895.91E-15205268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-22205268IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-17207264IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MENTAMEGVN HDENSNFWSK DGDQFPKGLR VLLVDDNVTC LHLLEKMLRD CSYRVTKCER  60
GEDALSMIRE NKGRFDIVLT DVHMPGMDGF RLLAEIAAMG ITLPVVMFSS DAEKDTVMKG  120
VNSGACNYLV KPIQVSTLKI LWQHVLRSNP SSSNNSTKEF ETSHLLTTSS SDDSHTRAEN  180
EEVNSKSLKK GSKDEANHGK NKVGAKKPRV VWTSELNRTF VMAVNSLGNH DVKPKKILQI  240
MRKMTGVPHL TRQNVSSHLQ KYRTNAKKIG EASKHQNATS SLINGPGFTN PTPSPLPSIG  300
CSGIQKYAAA AQYPSQAMSI APQQHCTGCS SRMPNPVEFP HHNVLPRYQM GLQSQPLAPL  360
QQPHLPLQNY GRQQQVNESA QCLPYAPAPS VGFAPPMNNA PPVLPKQSDN PLIMQMSHTP  420
TYMQIPDAAA HPIHYLSATI HHHPLHSQIP THAIQSLNSS TPNHASEQGP LVALSTIGVN  480
ESYGSNIAPV KGEFSYQNNH NPVVEDRQVC GNEAMFTDML DT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hnq_A2e-16271393116Chemotaxis protein CheY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064661.10.0PREDICTED: two-component response regulator ARR2-like
STRINGXP_010064661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-72response regulator 2