PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC028552.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 371aa    MW: 40571.3 Da    PI: 8.5035
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC028552.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.46.3e-4162138278
                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                   C v+gC++dls++++yhrrhkvCe hsk+p+v+++g+eqrfCqqCsrfh+l efD+ krsCr+rL++hn+rrrk+q+
  EcC028552.10  62 CLVDGCDSDLSKCRDYHRRHKVCELHSKTPKVIIRGQEQRFCQQCSRFHSLAEFDDVKRSCRKRLDGHNRRRRKPQP 138
                   **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-3356123IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.66759136IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-3860141IPR004333Transcription factor, SBP-box
PfamPF031101.5E-3062135IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
LCCLELHNRG IALWIQAQEW GSFEEESREK LDNPAASLMD SSSNGSLKRA RAPGFGSQVA  60
SCLVDGCDSD LSKCRDYHRR HKVCELHSKT PKVIIRGQEQ RFCQQCSRFH SLAEFDDVKR  120
SCRKRLDGHN RRRRKPQPDP LSLTAGRFLP SHQGTRFSPF SGPQMFPASA LASCSWPGVV  180
KVEDDTTSYN TPQLINFSER NLSFPGSTSS HFKGHIQFPF LQGTSAAHLG ASICKPALNP  240
NSTTGTGGNG NNARSSSSGL NRVVASERAL SLLSSPPAEN SEKGLSRMMQ LVPSTSAQSL  300
TTDLRYNRLG LGKPGNPGMD SESTGSGELH YHGIFQSEHA GLSANGQHQT PSFSWETLDN  360
ECAFSHCLMK M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-27621351184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118135KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtSBP transcriptional regulator probably involved in the domestication of maize. Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif. May repress the growth of lateral branches in length and numbers. {ECO:0000250|UniProtKB:Q49I55}.
UniProtSBP transcriptional regulator probably involved in the domestication of maize (PubMed:16079849). Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif (PubMed:25943393). May repress the growth of lateral branches in length and numbers (PubMed:25943393). {ECO:0000269|PubMed:16079849, ECO:0000269|PubMed:25943393}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044835.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_010044837.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_010044838.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_010044839.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_010044840.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_010044841.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_018724687.10.0PREDICTED: squamosa promoter-binding-like protein 16
SwissprotQ49I551e-59TGA1W_MAIZE; Teosinte glume architecture 1
SwissprotQ49I571e-59TGA1B_MAIZE; Teosinte glume architecture 1
TrEMBLA0A059D8A90.0A0A059D8A9_EUCGR; Uncharacterized protein
STRINGXP_010044835.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-50SBP family protein
Publications ? help Back to Top
  1. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  2. Wang H,Studer AJ,Zhao Q,Meeley R,Doebley JF
    Evidence That the Origin of Naked Kernels During Maize Domestication Was Caused by a Single Amino Acid Substitution in tga1.
    Genetics, 2015. 200(3): p. 965-74
    [PMID:25943393]