PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC027671.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 184aa MW: 20614.3 Da PI: 6.3537 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.4 | 6.1e-14 | 35 | 121 | 8 | 99 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 d+l+sg l +pkkf+ ++g++ s + l+ + + W++ + +k+ + ++l kGW+eF + + g +vFk++g+s+f +v++f+k EcC027671.10 35 CDTLESGKLGIPKKFLGRYGKD--LSSLVLLKVLGSSPWTIGV--EKCNDDeVWLWKGWREFMQHYSIGLGHLIVFKYKGSSTF--RVMIFNK 121 5889999************977..777899999**********..66655559**************************98998..9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.04E-20 | 25 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-20 | 25 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.24E-11 | 27 | 120 | No hit | No description |
PROSITE profile | PS50863 | 12.097 | 28 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-9 | 29 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-11 | 35 | 121 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MARRRRRPGE DGGVDPDAAA GPRLESPHFF KIILCDTLES GKLGIPKKFL GRYGKDLSSL 60 VLLKVLGSSP WTIGVEKCND DEVWLWKGWR EFMQHYSIGL GHLIVFKYKG SSTFRVMIFN 120 KSSSEINYSS SSISNLGSGF ISPEWEDVIE MEDSEDSASH QKMRVEPHSP CPQLSPSCSS 180 QDLE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010068262.1 | 1e-102 | PREDICTED: B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A059BB47 | 2e-77 | A0A059BB47_EUCGR; Uncharacterized protein | ||||
STRING | XP_010068262.1 | 1e-101 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-17 | B3 family protein |