PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC027602.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CO-like
Protein Properties Length: 407aa    MW: 44243.3 Da    PI: 4.9649
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC027602.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.5e-07444539
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                  +C+ ++e++ + +C+++  +lC +C  + H+       H++
  EcC027602.10  4 ICDFCGEQRSTVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                  8*****************************65677777766 PP
2zf-B_box26.31.5e-084689441
      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                    C++++++++   C++ ++ lC++C  ++H g       H++++
  EcC027602.10 46 LLCERCNSQPALVRCTEERVSLCQNCDWTGH-GasttasgHKRQT 89
                  57*****************************.5588888898876 PP
3CCT62.81.1e-21350393144
           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                   R +a++RYkeK+ktRkFeK++rYesRKa+A+ R RvKGrFvk+ 
  EcC027602.10 350 RSNAVMRYKEKKKTRKFEKTVRYESRKARADVRRRVKGRFVKAG 393
                   899**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.826147IPR000315B-box-type zinc finger
CDDcd000211.00E-8347No hitNo description
SMARTSM003361.6E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.3574390IPR000315B-box-type zinc finger
PfamPF006433.0E-54689IPR000315B-box-type zinc finger
CDDcd000214.52E-64790No hitNo description
SMARTSM003360.154890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.2350392IPR010402CCT domain
PfamPF062031.3E-16350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGFICDFCGE QRSTVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC  60
TEERVSLCQN CDWTGHGAST TASGHKRQTI NCYSGCPSSS ELSSIWSFVS DLPSIRESNC  120
EEGLGSMHIT ENSERTTWET LDNSTNLEAS SVLQANNVAG ALVGSSSLPE LKSMSQSLDQ  180
LALPVNTLNK VCYPMSNPGV CADDLYKELN MDEVDMNIED YEELFGLTLN NSEELFQNGG  240
LDSLFGTKDM SAADSNCQGD LLVEGSTVGR PSATQPACSV ASGDSIMSSK TEPILCFTSR  300
QAPSGISFSG LTGESSGADY QDCGASSLLL MGEPPWCPPG AENSVPSTSR SNAVMRYKEK  360
KKTRKFEKTV RYESRKARAD VRRRVKGRFV KAGQAYDYDP LSPTRSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036118.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_018720770.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_018720771.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-154COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A059A1F80.0A0A059A1F8_EUCGR; Uncharacterized protein
STRINGXP_010036118.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-134CONSTANS-like 9