PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC027036.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 404aa MW: 45612.8 Da PI: 6.8935

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC027036.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.3	5.4e-31	78	131	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rF +ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ EcC027036.30 78 PRLRWTPELHLRFTQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 131 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-28	74	132	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.774	74	134	IPR017930	Myb domain
SuperFamily	SSF46689	9.32E-15	77	132	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-22	78	133	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-9	79	130	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MNGDQNDGGL NKMVAIPLEI RSEDEEEGDC ESKTRNSTSS SNSIVEEFIE NNNNSDKKNG 60 ISSGTSTGLR PYVRTQVPRL RWTPELHLRF TQAVERLGGQ ERATPKLVLQ LMNIKGLSIA 120 HVKSHLQMYR SKKINDRGEV INSRQDFMGS ADQLPHAFWR HSILQNLDRK ISNIRDFRWS 180 SDRNWMSGPY LTDVAMGNAR NGIRITGFMG DNMNHVSHHS HPNTKDNFYF ELGRRKQPQD 240 PVLDSSNFSL LSGLTHSHPQ QKSTQIQPSK DQLIHEMRKA PQDEIWRIDI DGDHRERSTV 300 KRKADHGDGG GDLDLNLSLS NKMPRLVEVR RNDSGEQNEG EVVDGNLCLS LSCPSSSSSS 360 SLDLSLDLNM PFDKLKSLKE SDDSANVTYP KYLNLVSTLD LTMN

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MNGDQNDGGL NKMVAIPLEI RSEDEEEGDC ESKTRNSTSS SNSIVEEFIE NNNNSDKKNG  60
ISSGTSTGLR PYVRTQVPRL RWTPELHLRF TQAVERLGGQ ERATPKLVLQ LMNIKGLSIA  120
HVKSHLQMYR SKKINDRGEV INSRQDFMGS ADQLPHAFWR HSILQNLDRK ISNIRDFRWS  180
SDRNWMSGPY LTDVAMGNAR NGIRITGFMG DNMNHVSHHS HPNTKDNFYF ELGRRKQPQD  240
PVLDSSNFSL LSGLTHSHPQ QKSTQIQPSK DQLIHEMRKA PQDEIWRIDI DGDHRERSTV  300
KRKADHGDGG GDLDLNLSLS NKMPRLVEVR RNDSGEQNEG EVVDGNLCLS LSCPSSSSSS  360
SLDLSLDLNM PFDKLKSLKE SDDSANVTYP KYLNLVSTLD LTMN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	79	133	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	79	133	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	79	133	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	79	133	3	57	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010032996.1	0.0	PREDICTED: uncharacterized protein LOC104422379
STRING	XP_010032996.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-38	G2-like family protein